School of Applied Biosciences, Kyungpook National University, Daegu 41566, Republic of Korea.
Institute of Plant Medicine, Kyungpook National University, Daegu 41566, Republic of Korea.
Int J Syst Evol Microbiol. 2017 May;67(5):1206-1211. doi: 10.1099/ijsem.0.001788. Epub 2017 May 30.
A Gram-stain-negative, non-motile, non-spore-forming, rod-shaped, aerobic bacterial strain, designated 16F3PT, was isolated from the Han River, South Korea, and characterized taxonomically using a polyphasic approach. Phylogenetic analysis based on 16S rRNA gene sequences revealed 16F3PT to be within the genus Hymenobacter, and most closely related to Hymenobacterchitinivorans Txc1T (98.62 %) and Hymenobacterelongatus VUG-A112T (98.46 %). The phylogenetic distance from other species of the genus Hymenobacter with validly published names was greater than 4 % (i.e. sequence similarity was less than 96.0 %). Chemotaxonomic data also supported the classification of strain 16F3PT within the genus Hymenobacter. C16 : 0 (19.8 %), summed feature 3 (C16 : 1ω7c/C16 : 1ω6c; 15.4 %) and iso-C15 : 0 (13.0 %) were the major fatty acids, MK-7 was the predominant respiratory quinone, and phosphatidylethanolamine was the major polar lipid. The G+C content of the genomic DNA of strain 16F3PT was 61.9 mol%. DNA-DNA hybridization experiments showed that the values for DNA-DNA relatedness between strain 16F3PT and the phylogenetically closest neighbours were below 19 %. On the basis of its phenotypic properties and phylogenetic distinctiveness, strain 16F3PT represents a novel species of the genus Hymenobacter, for which the name Hymenobacter aquaticus sp. nov. is proposed. The type strain is 16F3PT (=KCTC 52194T=JCM 31653T).
一株革兰氏阴性、非运动、非孢子形成、杆状、需氧细菌菌株,命名为 16F3PT,从韩国汉江中分离得到,并通过多相方法进行了分类学表征。基于 16S rRNA 基因序列的系统发育分析表明,16F3PT 属于海氏杆菌属,与海氏杆菌属 chitinivorans Txc1T(98.62%)和海氏杆菌属 elongatus VUG-A112T(98.46%)最为密切相关。与具有有效发表名称的属内其他种的系统发育距离大于 4%(即序列相似性小于 96.0%)。化学分类数据也支持菌株 16F3PT 属于海氏杆菌属。菌株 16F3PT 的主要脂肪酸为 C16:0(19.8%)、summed feature 3(C16:1ω7c/C16:1ω6c;15.4%)和 iso-C15:0(13.0%),主要呼吸醌为 MK-7,主要极性脂为磷脂酰乙醇胺。菌株 16F3PT 基因组 DNA 的 G+C 含量为 61.9mol%。DNA-DNA 杂交实验表明,菌株 16F3PT 与亲缘关系最密切的近缘种之间的 DNA-DNA 相关值低于 19%。基于其表型特性和系统发育的独特性,菌株 16F3PT 代表海氏杆菌属的一个新种,命名为水生海氏杆菌(Hymenobacter aquaticus sp. nov.)。模式菌株为 16F3PT(=KCTC 52194T=JCM 31653T)。