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用于叠层成像重建的计算框架。

A computational framework for ptychographic reconstructions.

作者信息

Enders B, Thibault P

机构信息

Department of Physics & Institute of Medical Engineering, Technical University of Munich, 85747 Garching, Germany; Advanced Light Source, Lawrence Berkeley National Laboratory, Berkeley 94720, CA, USA.

School of Physics and Astronomy , University of Southampton, Southampton SO17 1BJ , , UK.

出版信息

Proc Math Phys Eng Sci. 2016 Dec;472(2196):20160640. doi: 10.1098/rspa.2016.0640.

Abstract

Ptychography is now a well-established X-ray microscopy tool for synchrotron end-stations equipped with a scanning stage and a pixelated detector. Ptychographic phasing algorithms use information from coherent diffraction to deliver quantitative images of the specimen at a resolution higher than the scanning resolution. These algorithms have traditionally been implemented in software on a per-instrument basis in various degrees of user-friendliness and sophistication. Here, we present Ptypy, a ptychography software written with the intention to serve as a framework across the diverse sets of available instruments and usage cases. A distinctive feature of the software is its formalism, which provides a convenient abstraction of the physical model, thus allowing for concise algorithmic implementations and portability across set-up geometries. We give an overview of the supported usage cases, explain the abstraction layer and design principles, and provide a step-by-step guide describing how an algorithm may be realized in a concise and readable manner. The software capabilities are illustrated with reconstructions from visible light and X-ray data.

摘要

叠层成像术如今是一种成熟的X射线显微镜工具,用于配备扫描台和像素化探测器的同步辐射终端站。叠层成像相位算法利用相干衍射信息,以高于扫描分辨率的分辨率提供样品的定量图像。传统上,这些算法已在软件中以逐仪器的方式实现,其用户友好程度和复杂程度各不相同。在此,我们展示了Ptypy,这是一款编写的叠层成像软件,旨在作为一个适用于各种可用仪器和使用案例的框架。该软件的一个显著特点是其形式主义,它提供了物理模型的便捷抽象,从而允许简洁的算法实现以及跨设置几何结构的可移植性。我们概述了支持的使用案例,解释了抽象层和设计原则,并提供了一个逐步指南,描述了如何以简洁且可读的方式实现一种算法。通过可见光和X射线数据的重建展示了该软件的功能。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/de5f/5247528/ead440568db7/rspa20160640-g1.jpg

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