Department of Biochemistry and Biophysics, Texas A&M University, College Station, Texas 77843, USA.
Center for Phage Technology, Texas A&M University, College Station, Texas 77843, USA.
Nat Commun. 2017 Feb 6;8:14341. doi: 10.1038/ncomms14341.
The system of the bacterium Escherichia coli and its virus, bacteriophage lambda, is paradigmatic for gene regulation in cell-fate development, yet insight about its mechanisms and complexities are limited due to insufficient resolution of study. Here we develop a 4-colour fluorescence reporter system at the single-virus level, combined with computational models to unravel both the interactions between phages and how individual phages determine cellular fates. We find that phages cooperate during lysogenization, compete among each other during lysis, and that confusion between the two pathways occasionally occurs. Additionally, we observe that phage DNAs have fluctuating cellular arrival times and vie for resources to replicate, enabling the interplay during different developmental paths, where each phage genome may make an individual decision. These varied strategies could separate the selection for replication-optimizing beneficial mutations during lysis from sequence diversification during lysogeny, allowing rapid adaptation of phage populations for various environments.
大肠杆菌及其病毒噬菌体 λ 的系统是细胞命运发育中基因调控的典范,然而由于研究分辨率不足,对其机制和复杂性的了解有限。在这里,我们在单个病毒水平上开发了一个 4 色荧光报告系统,结合计算模型来揭示噬菌体之间的相互作用以及单个噬菌体如何决定细胞命运。我们发现噬菌体在溶原化过程中相互协作,在裂解过程中相互竞争,并且两种途径之间偶尔会发生混淆。此外,我们观察到噬菌体 DNA 具有细胞到达时间的波动,并争夺资源进行复制,从而在不同的发育途径中进行相互作用,其中每个噬菌体基因组都可以做出单独的决定。这些不同的策略可以将裂解过程中复制优化有益突变的选择与溶原过程中的序列多样化区分开来,从而使噬菌体群体能够快速适应各种环境。