Undabarrena Agustina, Ugalde Juan A, Seeger Michael, Cámara Beatriz
Departmento de Química & Centro de Biotecnología, Universidad Técnica Federico Santa María , Valparaiso , Chile.
Centro de Genética y Genómica, Facultad de Medicina Clinica Alemana, Universidad del Desarrollo , Santiago , Chile.
PeerJ. 2017 Feb 14;5:e2912. doi: 10.7717/peerj.2912. eCollection 2017.
sp. H-KF8 is an actinobacterial strain isolated from marine sediments of a Chilean Patagonian fjord. Morphological characterization together with antibacterial activity was assessed in various culture media, revealing a carbon-source dependent activity mainly against Gram-positive bacteria ( and ). Genome mining of this antibacterial-producing bacterium revealed the presence of 26 biosynthetic gene clusters (BGCs) for secondary metabolites, where among them, 81% have low similarities with known BGCs. In addition, a genomic search in sp. H-KF8 unveiled the presence of a wide variety of genetic determinants related to heavy metal resistance (49 genes), oxidative stress (69 genes) and antibiotic resistance (97 genes). This study revealed that the marine-derived sp. H-KF8 bacterium has the capability to tolerate a diverse set of heavy metals such as copper, cobalt, mercury, chromate and nickel; as well as the highly toxic tellurite, a feature first time described for . In addition, sp. H-KF8 possesses a major resistance towards oxidative stress, in comparison to the soil reference strain A3(2). Moreover, sp. H-KF8 showed resistance to 88% of the antibiotics tested, indicating overall, a strong response to several abiotic stressors. The combination of these biological traits confirms the metabolic versatility of sp. H-KF8, a genetically well-prepared microorganism with the ability to confront the dynamics of the fjord-unique marine environment.
H-KF8菌株是从智利巴塔哥尼亚峡湾的海洋沉积物中分离出的一种放线菌菌株。在各种培养基中评估了其形态特征以及抗菌活性,结果显示其抗菌活性具有碳源依赖性,主要针对革兰氏阳性菌(以及)。对这种产生抗菌物质的细菌进行基因组挖掘发现,其存在26个次生代谢产物生物合成基因簇(BGCs),其中81%与已知BGCs的相似度较低。此外,对H-KF8菌株的基因组搜索发现,其存在多种与重金属抗性(49个基因)、氧化应激(69个基因)和抗生素抗性(97个基因)相关的遗传决定因素。这项研究表明,海洋来源的H-KF8菌株有能力耐受多种重金属,如铜、钴、汞、铬酸盐和镍;以及剧毒的亚碲酸盐,这是首次针对该菌株描述的特征。此外,与土壤参考菌株A3(2)相比,H-KF8菌株对氧化应激具有较强的抗性。此外,H-KF8菌株对88%的测试抗生素具有抗性,总体而言,表明其对多种非生物应激源有强烈反应。这些生物学特性的结合证实了H-KF8菌株的代谢多功能性,它是一种基因准备充分的微生物,有能力应对峡湾独特海洋环境的动态变化。