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不同脉孢菌及相关真菌物种中rDNA重复单元非转录间隔区异质性的系统发育意义

Phylogenetic implication of heterogeneity of the nontranscribed spacer of rDNA repeating unit in various Neurospora and related fungal species.

作者信息

Verma M, Dutta S K

机构信息

Department of Botany, Howard University, Washington, DC 20059.

出版信息

Curr Genet. 1987;11(4):309-14. doi: 10.1007/BF00355405.

DOI:10.1007/BF00355405
PMID:2834095
Abstract

Nontranscribed spacer (NTS) regions of ribosomal (r)RNA genes are non-conserved and are shown to be useful for phylogenetic studies. 32P-labelled N. crassa NTS pCC3400 DNA, was used as a molecular probe to hybridize Southern blots of genomic DNAs obtained from Neurospora, Gelacinospora, Sordaria, bacteria, plants, and animals. Our studies conclude that: (a) the homotahllic species of Neurospora should not belong to genus Gelacinospora (a historical question) and that Neurospora homothallic species are closer to Gelacinospora than to Sordaria; and that (b) all of the filamentous fungal species tested are indeed closer to the higher plant genome than to higher primate animal genome based on shared restriction sites of 12 enzymes. Our studies also demonstrate the usefulness of nontranscribed rRNA gene probes in resolving questions regarding phylogenetic relatedness between widely separated organisms using the parsimony principle based on mutation sites from DNA restriction maps; it has not been possible to do this using DNA: DNA hybridization procedures that involved the total genome.

摘要

核糖体(r)RNA基因的非转录间隔区(NTS)是不保守的,已证明其在系统发育研究中很有用。用32P标记的粗糙脉孢菌NTS pCC3400 DNA作为分子探针,与从脉孢菌属、胶孢菌属、粪壳菌属、细菌、植物和动物获得的基因组DNA的Southern杂交印迹进行杂交。我们的研究得出以下结论:(a)脉孢菌属的同宗配合物种不应属于胶孢菌属(一个历史问题),并且脉孢菌属的同宗配合物种与胶孢菌属的亲缘关系比与粪壳菌属更近;以及(b)基于12种酶的共享限制位点,所有测试的丝状真菌物种确实与高等植物基因组的亲缘关系比与高等灵长类动物基因组更近。我们的研究还证明了非转录rRNA基因探针在使用基于DNA限制图谱突变位点的简约原则解决广泛分离的生物体之间系统发育相关性问题方面的有用性;使用涉及全基因组的DNA:DNA杂交程序无法做到这一点。

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1
Phylogenetic implication of heterogeneity of the nontranscribed spacer of rDNA repeating unit in various Neurospora and related fungal species.不同脉孢菌及相关真菌物种中rDNA重复单元非转录间隔区异质性的系统发育意义
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引用本文的文献

1
Neurospora crassa nuclear genome contains analogy of Saccharomyces cerevisiae genes for ribosomal RNA processing.粗糙脉孢菌的核基因组含有与酿酒酵母核糖体RNA加工相关基因的类似物。
Curr Genet. 1987;12(3):225-9. doi: 10.1007/BF00436884.

本文引用的文献

1
25S ribosomal RNA homologies of basidiomycetous yeasts: taxonomic and phylogenetic implications.担子菌酵母的25S核糖体RNA同源性:分类学和系统发育学意义
Can J Microbiol. 1984 May;30(5):613-21. doi: 10.1139/m84-091.
2
Highly conserved 5S ribosomal RNA sequences in four rust fungi and atypical 5S rRNA secondary structure in Microstroma juglandis.四种锈菌中高度保守的5S核糖体RNA序列以及胡桃微座孢中不典型的5S rRNA二级结构。
Nucleic Acids Res. 1984 May 11;12(9):3951-8. doi: 10.1093/nar/12.9.3951.
3
Evolutionary tree for apes and humans based on cleavage maps of mitochondrial DNA.
基于线粒体DNA切割图谱构建的猿类和人类进化树。
Proc Natl Acad Sci U S A. 1981 Apr;78(4):2432-6. doi: 10.1073/pnas.78.4.2432.
4
Ribosomal RNA genes of Neurospora crassa: multiple copies and specificities.粗糙脉孢菌的核糖体RNA基因:多个拷贝及特异性
Mol Gen Genet. 1983;189(2):207-10. doi: 10.1007/BF00337805.
5
Organization of the ribosomal ribonucleic acid genes in various wild-type strains and wild-collected strains of Neurospora.粗糙脉孢菌各种野生型菌株和野生采集菌株中核糖体核糖核酸基因的组织方式。
Mol Gen Genet. 1984;196(2):275-82. doi: 10.1007/BF00328060.
6
Nucleotide composition of deoxyribonucleic acid of some species of Cryptococcus, Rhodotorula, and Sporobolomyces.部分隐球菌属、红酵母属和掷孢酵母属物种的脱氧核糖核酸的核苷酸组成
J Bacteriol. 1969 Jun;98(3):1069-72. doi: 10.1128/jb.98.3.1069-1072.1969.
7
Homogenization of geographical variants at the nontranscribed spacer of rDNA in Drosophila mercatorum.黑腹果蝇rDNA非转录间隔区地理变异的同质化
Mol Biol Evol. 1985 Jul;2(4):338-46. doi: 10.1093/oxfordjournals.molbev.a040355.
8
Labeling deoxyribonucleic acid to high specific activity in vitro by nick translation with DNA polymerase I.通过用DNA聚合酶I进行切口平移在体外将脱氧核糖核酸标记至高比活性。
J Mol Biol. 1977 Jun 15;113(1):237-51. doi: 10.1016/0022-2836(77)90052-3.
9
Mathematical model for studying genetic variation in terms of restriction endonucleases.基于限制性内切酶研究基因变异的数学模型。
Proc Natl Acad Sci U S A. 1979 Oct;76(10):5269-73. doi: 10.1073/pnas.76.10.5269.
10
DNA homologies among homothallic, pseudo-homothallic and heterothallic species of Neurospora.粗糙脉孢菌的同宗配合、拟同宗配合和异宗配合物种之间的DNA同源性。
Mol Gen Genet. 1976 Sep 23;147(3):325-30. doi: 10.1007/BF00582884.