Somboonna Naraporn, Wilantho Alisa, Srisuttiyakorn Chutika, Assawamakin Anunchai, Tongsima Sissades
Department of Microbiology, Faculty of Science, Chulalongkorn University, Phyathai Road, Pathumwan, Bangkok, 10330, Thailand.
Omics Sciences and Bioinformatics Center, Faculty of Science, Chulalongkorn University, Bangkok, 10330, Thailand.
Arch Microbiol. 2017 Sep;199(7):1035-1042. doi: 10.1007/s00203-017-1375-0. Epub 2017 Apr 8.
The Human Microbiome Project was first established to understand the roles of human-associated microbes to human health and disease. This study presents preliminary findings of Thai female facial skin microbiome using three pooled samples from groups of skin microbiome profiles, namely (1) healthy and (2) acne-prone young adults (teenage.hea and teenage.acn) and (3) healthy elderly adults (elderly.hea) based on standard dermatological criteria. These samples were sequenced using 454-pyrosequencing targeting 16S rRNA (V3-V4 regions). Good's coverage index of greater than 92% shows sufficient sampling of our data for each group. Three unique OTUs for each microbiome profile (43, 258 and 59 for teenage.hea, teenage.acn and ederly.hea, respectively) were obtained with 134 shared OTUs among the three datasets. Based on Morisita-Horn similarity coefficient, age is the major factor that brings the community relationship factor closer. The comparison among the three datasets reveal majority of Gemmatimonadetes, Planctomycetes and Nitrospirae in the teenage.hea, whereas Firmicutes are more prevalent in teenage.acn and elderly.hea skin types. In addition, when comparing Thai facial microbial diversity with the 16S data from U.S. forehead female database, significant differences were found among orders of bacteria, pointing to possible differences in human ecto-flora.
人类微生物组计划最初旨在了解与人类相关的微生物在人类健康和疾病中的作用。本研究基于标准皮肤病学标准,使用来自三组皮肤微生物组谱的合并样本,即(1)健康和(2)易患痤疮的年轻人(青少年健康组和青少年痤疮组)以及(3)健康老年人(老年健康组),展示了泰国女性面部皮肤微生物组的初步研究结果。这些样本使用靶向16S rRNA(V3 - V4区域)的454焦磷酸测序法进行测序。大于92%的古德覆盖率指数表明我们对每组数据的采样充足。每个微生物组谱分别获得了三个独特的操作分类单元(青少年健康组、青少年痤疮组和老年健康组分别为43、258和59个),三个数据集中共有134个共享操作分类单元。基于森下 - 霍恩相似系数,年龄是使群落关系因素更紧密的主要因素。三个数据集之间的比较显示,青少年健康组中大多数是芽单胞菌门、浮霉菌门和硝化螺旋菌门,而厚壁菌门在青少年痤疮组和老年健康组皮肤类型中更为普遍。此外,当将泰国面部微生物多样性与来自美国前额女性数据库的16S数据进行比较时,发现细菌目之间存在显著差异,这表明人类体表微生物群可能存在差异。