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DNA测序与熔解曲线。

DNA sequencing and melting curve.

作者信息

Azbel M Y

出版信息

Proc Natl Acad Sci U S A. 1979 Jan;76(1):101-5. doi: 10.1073/pnas.76.1.101.

DOI:10.1073/pnas.76.1.101
PMID:284324
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC382884/
Abstract

The dependence of DNA absorbance (for light at about 260 nm) on temperature is related to a specific DNA sequence structure in the vicinity of DNA thermal denaturation (the so-called DNA melting or coiling). A straightforward analysis of the experimental DNA melting curve allows us to determine the lengths, the A+T content, and the location in DNA of certain domains. In the case of a specific DNA fragmentation, the order of fragments in DNA can be learned from this analysis, nondestructively and quickly, without fractionating the fragments and other methods of fragmentation. If the DNA nucleotide sequence is known except for some sites and uncertain portions, the analysis determines these sites and the accuracy of the sequence at the portions. This information may complement exact methods of DNA sequencing. The proposed analysis is applied to bacteriophage phiX174, whose melting curve is known. The results are compared to and found to be in an excellent agreement with the known phiX174 nucleotide sequence.

摘要

DNA吸光度(对于约260nm波长的光)对温度的依赖性与DNA热变性(所谓的DNA解链或卷曲)附近的特定DNA序列结构有关。对实验性DNA解链曲线进行直接分析,能够确定某些结构域的长度、A+T含量以及在DNA中的位置。对于特定的DNA片段化情况,无需对片段进行分级分离和其他片段化方法,通过该分析就能无损且快速地得知DNA中片段的顺序。如果除了某些位点和不确定部分外,DNA核苷酸序列已知,那么该分析可以确定这些位点以及这些部分序列的准确性。此信息可补充DNA测序的精确方法。将所提出的分析方法应用于已知解链曲线的噬菌体phiX174。结果与已知的phiX174核苷酸序列进行比较,发现两者吻合度极高。

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本文引用的文献

1
Spectral analysis of the intramolecular heterogeneity of lambda-DNA.
J Mol Biol. 1967 Sep 28;28(3):469-77. doi: 10.1016/s0022-2836(67)80097-4.
2
Determination of DNA composition and concentration by spectral analysis.通过光谱分析测定DNA组成和浓度。
J Mol Biol. 1966 Apr;16(2):347-58. doi: 10.1016/s0022-2836(66)80178-x.
3
The inverse problem for DNA.DNA的逆问题。
Biopolymers. 1973;12(7):1591-609. doi: 10.1002/bip.1973.360120712.
4
Nucleotide sequence of the gene coding for the bacteriophage MS2 coat protein.编码噬菌体MS2外壳蛋白的基因的核苷酸序列。
Nature. 1972 May 12;237(5350):82-8. doi: 10.1038/237082a0.
5
Base compisition heterogeneity in kinetoplast DNA FROM FOUR SPECIES OF HEMOFLAGELLATES.
Biochem Biophys Res Commun. 1974 Dec 23;61(4):1249-55. doi: 10.1016/s0006-291x(74)80418-3.
6
Recursion relation generation of probability profiles for specific-sequence macromolecules with long-range correlations.具有长程相关性的特定序列大分子概率分布的递归关系生成
Biopolymers. 1974;13(9):1859-71. doi: 10.1002/bip.1974.360130916.
7
Complete nucleotide sequence of bacteriophage MS2 RNA: primary and secondary structure of the replicase gene.噬菌体MS2 RNA的完整核苷酸序列:复制酶基因的一级和二级结构
Nature. 1976 Apr 8;260(5551):500-7. doi: 10.1038/260500a0.
8
Hyperfine structure in melting profile of bacteriophage lambda DNA.噬菌体λ DNA 熔解曲线中的超精细结构
Biopolymers. 1976 Apr;15(4):655-70. doi: 10.1002/bip.1976.360150406.
9
High resolution thermal denaturation of DNA: thermalites of bacteriophage DNA.DNA的高分辨率热变性:噬菌体DNA的热谱图
Biochemistry. 1976 Feb 24;15(4):741-50. doi: 10.1021/bi00649a004.
10
High-resolution thermal denaturation of DNA. I. Theoretical and practical considerations for the resolution of thermal subtransitions.DNA的高分辨率热变性。I. 热亚转变分辨率的理论与实践考量
Biopolymers. 1976 Jan;15(1):153-74. doi: 10.1002/bip.1976.360150111.