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遗传图谱比较器:一款用于显示和比较遗传图谱的用户友好型应用程序。

The genetic map comparator: a user-friendly application to display and compare genetic maps.

作者信息

Holtz Yan, David Jacques Léon, Ranwez Vincent

机构信息

Montpellier Supagro, Department BE, UMR AGAP, 34060 Montpellier, France.

出版信息

Bioinformatics. 2017 May 1;33(9):1387-1388. doi: 10.1093/bioinformatics/btw816.

DOI:10.1093/bioinformatics/btw816
PMID:28453680
Abstract

MOTIVATION

Marker-assisted selection strongly relies on genetic maps to accelerate breeding programs. High-density maps are now available for numerous species. Dedicated tools are required to compare several high-density maps on the basis of their key characteristics, while pinpointing their differences and similarities.

RESULTS

We developed the Genetic Map Comparator-a web-based application for easy comparison of different maps according to their key statistics and the relative positions of common markers.

AVAILABILITY AND IMPLEMENTATION

The Genetic Map Comparator is available online at: http://bioweb.supagro.inra.fr/geneticMapComparator. The source code is freely available on GitHub under the under the CeCILL general public license: https://github.com/holtzy/GenMap-Comparator.

CONTACT

Holtz@supagro.fr; Ranwez@supagro.fr.

摘要

动机

标记辅助选择强烈依赖遗传图谱来加速育种计划。现在许多物种都有高密度图谱。需要专门的工具来根据关键特征比较多个高密度图谱,同时找出它们的差异和相似之处。

结果

我们开发了遗传图谱比较器——一个基于网络的应用程序,用于根据关键统计数据和共同标记的相对位置轻松比较不同的图谱。

可用性和实现方式

遗传图谱比较器可在以下网址在线获取:http://bioweb.supagro.inra.fr/geneticMapComparator。源代码在CeCILL通用公共许可证下可在GitHub上免费获取:https://github.com/holtzy/GenMap-Comparator。

联系方式

Holtz@supagro.fr;Ranwez@supagro.fr。

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