Holtz Yan, David Jacques Léon, Ranwez Vincent
Montpellier Supagro, Department BE, UMR AGAP, 34060 Montpellier, France.
Bioinformatics. 2017 May 1;33(9):1387-1388. doi: 10.1093/bioinformatics/btw816.
Marker-assisted selection strongly relies on genetic maps to accelerate breeding programs. High-density maps are now available for numerous species. Dedicated tools are required to compare several high-density maps on the basis of their key characteristics, while pinpointing their differences and similarities.
We developed the Genetic Map Comparator-a web-based application for easy comparison of different maps according to their key statistics and the relative positions of common markers.
The Genetic Map Comparator is available online at: http://bioweb.supagro.inra.fr/geneticMapComparator. The source code is freely available on GitHub under the under the CeCILL general public license: https://github.com/holtzy/GenMap-Comparator.
标记辅助选择强烈依赖遗传图谱来加速育种计划。现在许多物种都有高密度图谱。需要专门的工具来根据关键特征比较多个高密度图谱,同时找出它们的差异和相似之处。
我们开发了遗传图谱比较器——一个基于网络的应用程序,用于根据关键统计数据和共同标记的相对位置轻松比较不同的图谱。
遗传图谱比较器可在以下网址在线获取:http://bioweb.supagro.inra.fr/geneticMapComparator。源代码在CeCILL通用公共许可证下可在GitHub上免费获取:https://github.com/holtzy/GenMap-Comparator。