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该物种首个可转化菌株OK5的全基因组序列

Complete Genome Sequence of OK5, the First Transformable Strain in the Species.

作者信息

Zhou Peng, Xie Gary, Li Xiaoli, Liu Jinman, Qi Fengxia

机构信息

Department of Microbiology and Immunology, College of Medicine, University of Oklahoma Health Sciences Center, Oklahoma City, Oklahoma, USA

Bioscience Division, Los Alamos National Laboratory, Los Alamos, New Mexico, USA.

出版信息

Genome Announc. 2017 Jun 1;5(22):e00391-17. doi: 10.1128/genomeA.00391-17.

DOI:10.1128/genomeA.00391-17
PMID:28572307
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5454190/
Abstract

The strain OK5 was isolated from a human saliva sample and was the first strain shown to be genetically transformable in the genus. Genetic studies using this strain have helped us gain much insight into the ecology of human oral biofilms. Here, we report the complete genome sequence of OK5.

摘要

菌株OK5是从一份人类唾液样本中分离出来的,是该属中首个被证明具有遗传可转化性的菌株。利用该菌株进行的遗传学研究帮助我们深入了解了人类口腔生物膜的生态学。在此,我们报告OK5的完整基因组序列。

相似文献

1
Complete Genome Sequence of OK5, the First Transformable Strain in the Species.该物种首个可转化菌株OK5的全基因组序列
Genome Announc. 2017 Jun 1;5(22):e00391-17. doi: 10.1128/genomeA.00391-17.
2
A YadA-like autotransporter, Hag1 in Veillonella atypica is a multivalent hemagglutinin involved in adherence to oral streptococci, Porphyromonas gingivalis, and human oral buccal cells.一种类似YadA的自转运蛋白,非典型韦荣球菌中的Hag1是一种多价血凝素,参与对口腔链球菌、牙龈卟啉单胞菌和人类口腔颊细胞的黏附。
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Appl Environ Microbiol. 2017 Sep 15;83(19). doi: 10.1128/AEM.01079-17. Print 2017 Oct 1.
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Comparative Genomics Uncovers the Genetic Diversity and Characters of and Provides Insights Into Its Potential Applications.比较基因组学揭示了[具体物种名称]的遗传多样性和特征,并为其潜在应用提供了见解。 (注:原文中“of and”表述有误,推测可能是“of [具体物种名称] and”之类的,但因信息不完整只能这样翻译大概意思)
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Proc Natl Acad Sci U S A. 2004 Nov 30;101(48):16917-22. doi: 10.1073/pnas.0407457101. Epub 2004 Nov 16.
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Microbiology (Reading). 2016 Oct;162(10):1735-1743. doi: 10.1099/mic.0.000366. Epub 2016 Aug 26.
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The first case of Veillonella atypica bacteremia in a patient with renal pelvic tumor.首例肾盂肿瘤患者发生非典型韦荣球菌菌血症。
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Differentiation of Veillonella atypica, Veillonella dispar and Veillonella parvula using restricted fragment-length polymorphism analysis of 16S rDNA amplified by polymerase chain reaction.利用聚合酶链反应扩增的16S rDNA的限制性片段长度多态性分析鉴别非典型韦荣球菌、殊异韦荣球菌和小韦荣球菌。
Oral Microbiol Immunol. 1997 Dec;12(6):350-3. doi: 10.1111/j.1399-302x.1997.tb00737.x.
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Identification of Veillonella tobetsuensis in tongue biofilm by using a species-specific primer pair.利用种特异性引物对舌生物膜中韦荣氏菌的鉴定。
Anaerobe. 2013 Aug;22:77-81. doi: 10.1016/j.anaerobe.2013.04.015. Epub 2013 May 7.
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引用本文的文献

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Veillonellae: Beyond Bridging Species in Oral Biofilm Ecology.韦荣氏菌属:超越口腔生物膜生态学中的桥梁物种
Front Oral Health. 2021 Oct 29;2:774115. doi: 10.3389/froh.2021.774115. eCollection 2021.
2
[Research progress in the relationship between Veillonella and oral diseases].[韦荣球菌与口腔疾病关系的研究进展]
Hua Xi Kou Qiang Yi Xue Za Zhi. 2020 Oct 1;38(5):576-582. doi: 10.7518/hxkq.2020.05.018.
3
Comparative Genomics Uncovers the Genetic Diversity and Characters of and Provides Insights Into Its Potential Applications.比较基因组学揭示了[具体物种名称]的遗传多样性和特征,并为其潜在应用提供了见解。 (注:原文中“of and”表述有误,推测可能是“of [具体物种名称] and”之类的,但因信息不完整只能这样翻译大概意思)
Front Microbiol. 2020 Jun 23;11:1219. doi: 10.3389/fmicb.2020.01219. eCollection 2020.
4
Veillonella Catalase Protects the Growth of Fusobacterium nucleatum in Microaerophilic and Streptococcus gordonii-Resident Environments.韦荣球菌过氧化氢酶在微需氧和戈登链球菌存在环境中保护具核梭杆菌生长。
Appl Environ Microbiol. 2017 Sep 15;83(19). doi: 10.1128/AEM.01079-17. Print 2017 Oct 1.

本文引用的文献

1
Identification and characterization of a haem biosynthesis locus in Veillonella.韦荣氏球菌属中血红素生物合成基因座的鉴定与表征
Microbiology (Reading). 2016 Oct;162(10):1735-1743. doi: 10.1099/mic.0.000366. Epub 2016 Aug 26.
2
The Sialic Acid Binding Protein, Hsa, in Streptococcus gordonii DL1 also Mediates Intergeneric Coaggregation with Veillonella Species.戈登氏链球菌DL1中的唾液酸结合蛋白Hsa也介导与韦荣氏菌属菌种的属间共聚。
PLoS One. 2015 Nov 25;10(11):e0143898. doi: 10.1371/journal.pone.0143898. eCollection 2015.
3
Establishment of a counter-selectable markerless mutagenesis system in Veillonella atypica.在非典型韦荣球菌中建立一种可反向选择的无标记诱变系统。
J Microbiol Methods. 2015 May;112:70-2. doi: 10.1016/j.mimet.2015.03.010. Epub 2015 Mar 12.
4
A YadA-like autotransporter, Hag1 in Veillonella atypica is a multivalent hemagglutinin involved in adherence to oral streptococci, Porphyromonas gingivalis, and human oral buccal cells.一种类似YadA的自转运蛋白,非典型韦荣球菌中的Hag1是一种多价血凝素,参与对口腔链球菌、牙龈卟啉单胞菌和人类口腔颊细胞的黏附。
Mol Oral Microbiol. 2015 Aug;30(4):269-279. doi: 10.1111/omi.12091. Epub 2015 Jan 19.
5
Establishment of a tractable genetic transformation system in Veillonella spp.建立可行的韦荣氏球菌属遗传转化系统
Appl Environ Microbiol. 2012 May;78(9):3488-91. doi: 10.1128/AEM.00196-12. Epub 2012 Feb 17.
6
IMG: the Integrated Microbial Genomes database and comparative analysis system.IMG:综合微生物基因组数据库和比较分析系统。
Nucleic Acids Res. 2012 Jan;40(Database issue):D115-22. doi: 10.1093/nar/gkr1044.
7
Genetic transformation of Veillonella parvula.小韦荣球菌的遗传转化。
FEMS Microbiol Lett. 2011 Sep;322(2):138-44. doi: 10.1111/j.1574-6968.2011.02344.x. Epub 2011 Jul 18.
8
The Human Oral Microbiome Database: a web accessible resource for investigating oral microbe taxonomic and genomic information.人类口腔微生物组数据库:一个可访问的网络资源,用于研究口腔微生物的分类和基因组信息。
Database (Oxford). 2010 Jul 6;2010:baq013. doi: 10.1093/database/baq013.
9
Transposases are the most abundant, most ubiquitous genes in nature.转座酶是自然界中最丰富、最普遍的基因。
Nucleic Acids Res. 2010 Jul;38(13):4207-17. doi: 10.1093/nar/gkq140. Epub 2010 Mar 9.
10
Central role of the early colonizer Veillonella sp. in establishing multispecies biofilm communities with initial, middle, and late colonizers of enamel.早期定植者韦荣氏菌在与釉质初始、中期和晚期定植者建立多物种生物膜群落中的核心作用。
J Bacteriol. 2010 Jun;192(12):2965-72. doi: 10.1128/JB.01631-09. Epub 2010 Feb 12.