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Multi-atlas Segmentation as a Graph Labelling Problem: Application to Partially Annotated Atlas Data.作为图标记问题的多图谱分割:应用于部分标注的图谱数据
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Multi-atlas segmentation of biomedical images: A survey.生物医学图像的多图谱分割:一项综述。
Med Image Anal. 2015 Aug;24(1):205-219. doi: 10.1016/j.media.2015.06.012. Epub 2015 Jul 6.
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Multiatlas segmentation as nonparametric regression.多图谱分割作为非参数回归
IEEE Trans Med Imaging. 2014 Sep;33(9):1803-17. doi: 10.1109/TMI.2014.2321281. Epub 2014 Apr 30.
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Clinical and Biomarker Changes in Premanifest Huntington Disease Show Trial Feasibility: A Decade of the PREDICT-HD Study.在症状前亨廷顿病的临床试验和生物标志物变化显示研究可行性: PREDICT-HD 研究十年。
Front Aging Neurosci. 2014 Apr 22;6:78. doi: 10.3389/fnagi.2014.00078. eCollection 2014.
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Contour-driven regression for label inference in atlas-based segmentation.基于图谱分割中用于标签推断的轮廓驱动回归
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Multi-Atlas Segmentation with Joint Label Fusion.基于联合标签融合的多图谱分割
IEEE Trans Pattern Anal Mach Intell. 2013 Mar;35(3):611-23. doi: 10.1109/TPAMI.2012.143. Epub 2012 Jun 26.
7
A Bayesian model of shape and appearance for subcortical brain segmentation.基于形状和外观的贝叶斯模型进行皮质下脑区分割。
Neuroimage. 2011 Jun 1;56(3):907-22. doi: 10.1016/j.neuroimage.2011.02.046. Epub 2011 Feb 23.
8
LOGISMOS--layered optimal graph image segmentation of multiple objects and surfaces: cartilage segmentation in the knee joint.LOGISMOS--多层次最优图图像分割多个物体和表面:膝关节软骨分割。
IEEE Trans Med Imaging. 2010 Dec;29(12):2023-37. doi: 10.1109/TMI.2010.2058861. Epub 2010 Jul 19.
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Whole brain segmentation: automated labeling of neuroanatomical structures in the human brain.全脑分割:人脑神经解剖结构的自动标记
Neuron. 2002 Jan 31;33(3):341-55. doi: 10.1016/s0896-6273(02)00569-x.

具有形状先验的全局最优标签融合

Globally Optimal Label Fusion with Shape Priors.

作者信息

Oguz Ipek, Kashyap Satyananda, Wang Hongzhi, Yushkevich Paul, Sonka Milan

机构信息

Department of Radiology, University of Pennsylvania, Philadelphia, USA.

Iowa Institute for Biomedical Imaging, University of Iowa, Iowa City, USA.

出版信息

Med Image Comput Comput Assist Interv. 2016 Oct;9901:538-546. doi: 10.1007/978-3-319-46723-8_62. Epub 2016 Oct 2.

DOI:10.1007/978-3-319-46723-8_62
PMID:28626843
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5471814/
Abstract

Multi-atlas label fusion methods have gained popularity in a variety of segmentation tasks given their attractive performance. Graph-based segmentation methods are widely used given their global optimality guarantee. We propose a novel approach, GOLF, that combines the strengths of these two approaches. GOLF incorporates shape priors to the label-fusion problem and provides a globally optimal solution even for the multi-label scenario, while also leveraging the highly accurate posterior maps from a multi-atlas label fusion approach. We demonstrate GOLF for the joint segmentation of the left and right pairs of caudate, putamen, globus pallidus and nucleus accumbens. Compared to the FreeSurfer and FIRST approaches, GOLF is significantly more accurate on all reported indices for all 8 structures. We also present comparisons to a multi-atlas approach, which reveals further insights on the contributions of the different components of the proposed framework.

摘要

鉴于其出色的性能,多图谱标签融合方法在各种分割任务中受到了广泛欢迎。基于图的分割方法因其全局最优性保证而被广泛使用。我们提出了一种新颖的方法——GOLF,它结合了这两种方法的优势。GOLF将形状先验纳入标签融合问题,即使在多标签场景下也能提供全局最优解,同时还利用了多图谱标签融合方法生成的高精度后验图谱。我们展示了GOLF用于尾状核、壳核、苍白球和伏隔核左右对的联合分割。与FreeSurfer和FIRST方法相比,GOLF在所有8个结构的所有报告指标上都显著更准确。我们还与一种多图谱方法进行了比较,这揭示了对所提出框架不同组件贡献的进一步见解。