具有抗真菌活性的植物促生根际细菌MDJK30的全基因组序列
Complete Genome Sequence of MDJK30, a Plant Growth-Promoting Rhizobacterium with Antifungal Activity.
作者信息
Wang Yun, Liu Hu, Liu Kai, Wang Chengqiang, Ma Hailin, Li Yuhuan, Hou Qihui, Liu Fangchun, Zhang Tongrui, Wang Haide, Wang Beibei, Ma Jinjin, Ge Ruofei, Xu Baochao, Yao Gan, Xu Wenfeng, Fan Lingchao, Ding Yanqin, Du Binghai
机构信息
College of Life Sciences/Shandong Key Laboratory of Agricultural Microbiology/National Engineering Laboratory for Efficient Utilization of Soil and Fertilizer Resources, Shandong Agricultural University, Tai'an, China.
Shandong Academy of Forestry, Jinan, China.
出版信息
Genome Announc. 2017 Jun 22;5(25):e00577-17. doi: 10.1128/genomeA.00577-17.
Abstract
MDJK30 was isolated from the rhizosphere of a peony. It could control the pathogen of peony root rot. Here, we report the complete genome sequence of MDJK30. Eleven secondary metabolism gene clusters were predicted.
摘要
MDJK30是从牡丹根际分离得到的。它能够控制牡丹根腐病的病原菌。在此，我们报道了MDJK30的完整基因组序列。预测有11个次生代谢基因簇。
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本文引用的文献
1
a peculiar prasinophyte with a taste for bacteria sheds light on plastid evolution.一种对细菌有偏好的奇特绿藻为质体进化提供了线索。
Symbiosis. 2017;71(1):1-7. doi: 10.1007/s13199-016-0464-1. Epub 2016 Nov 10.
2
Difficidin and bacilysin from Bacillus amyloliquefaciens FZB42 have antibacterial activity against Xanthomonas oryzae rice pathogens.解淀粉芽孢杆菌FZB42产生的双效霉素和芽孢溶菌素对水稻白叶枯病菌具有抗菌活性。
Sci Rep. 2015 Aug 13;5:12975. doi: 10.1038/srep12975.
3
Differential proteomics analysis of Bacillus amyloliquefaciens and its genome-shuffled mutant for improving surfactin production.解淀粉芽孢杆菌及其基因组改组突变体用于提高表面活性素产量的差异蛋白质组学分析
Int J Mol Sci. 2014 Oct 31;15(11):19847-69. doi: 10.3390/ijms151119847.
4
The carbohydrate-active enzymes database (CAZy) in 2013.2013 版碳水化合物活性酶数据库（CAZy）。
Nucleic Acids Res. 2014 Jan;42(Database issue):D490-5. doi: 10.1093/nar/gkt1178. Epub 2013 Nov 21.
5
antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences.antiSMASH：快速识别、注释和分析细菌和真菌基因组序列中次生代谢产物生物合成基因簇。
Nucleic Acids Res. 2011 Jul;39(Web Server issue):W339-46. doi: 10.1093/nar/gkr466. Epub 2011 Jun 14.
6
PHAST: a fast phage search tool.PHAST：一种快速噬菌体搜索工具。
Nucleic Acids Res. 2011 Jul;39(Web Server issue):W347-52. doi: 10.1093/nar/gkr485. Epub 2011 Jun 14.
7
IslandViewer: an integrated interface for computational identification and visualization of genomic islands.IslandViewer：用于基因组岛的计算识别与可视化的集成界面。
Bioinformatics. 2009 Mar 1;25(5):664-5. doi: 10.1093/bioinformatics/btp030. Epub 2009 Jan 16.
8
Difficidin and bacilysin produced by plant-associated Bacillus amyloliquefaciens are efficient in controlling fire blight disease.与植物相关的解淀粉芽孢杆菌产生的双效霉素和芽孢溶素在控制火疫病方面很有效。
J Biotechnol. 2009 Mar 10;140(1-2):38-44. doi: 10.1016/j.jbiotec.2008.10.015. Epub 2008 Nov 18.
9
Short read fragment assembly of bacterial genomes.细菌基因组的短读片段组装
Genome Res. 2008 Feb;18(2):324-30. doi: 10.1101/gr.7088808. Epub 2007 Dec 14.
10
CRISPR recognition tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats.CRISPR识别工具（CRT）：一种用于自动检测成簇规律间隔回文重复序列的工具。
BMC Bioinformatics. 2007 Jun 18;8:209. doi: 10.1186/1471-2105-8-209.
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