Humplik Jan, Tkačik Gašper
Institute of Science and Technology Austria, Klosterneuburg, Austria.
PLoS Comput Biol. 2017 Sep 19;13(9):e1005763. doi: 10.1371/journal.pcbi.1005763. eCollection 2017 Sep.
Advances in multi-unit recordings pave the way for statistical modeling of activity patterns in large neural populations. Recent studies have shown that the summed activity of all neurons strongly shapes the population response. A separate recent finding has been that neural populations also exhibit criticality, an anomalously large dynamic range for the probabilities of different population activity patterns. Motivated by these two observations, we introduce a class of probabilistic models which takes into account the prior knowledge that the neural population could be globally coupled and close to critical. These models consist of an energy function which parametrizes interactions between small groups of neurons, and an arbitrary positive, strictly increasing, and twice differentiable function which maps the energy of a population pattern to its probability. We show that: 1) augmenting a pairwise Ising model with a nonlinearity yields an accurate description of the activity of retinal ganglion cells which outperforms previous models based on the summed activity of neurons; 2) prior knowledge that the population is critical translates to prior expectations about the shape of the nonlinearity; 3) the nonlinearity admits an interpretation in terms of a continuous latent variable globally coupling the system whose distribution we can infer from data. Our method is independent of the underlying system's state space; hence, it can be applied to other systems such as natural scenes or amino acid sequences of proteins which are also known to exhibit criticality.
多单元记录技术的进步为大型神经群体活动模式的统计建模铺平了道路。最近的研究表明,所有神经元的总和活动强烈地塑造了群体反应。最近的另一项发现是,神经群体也表现出临界性,即不同群体活动模式的概率具有异常大的动态范围。受这两个观察结果的启发,我们引入了一类概率模型,该模型考虑了神经群体可能全局耦合且接近临界的先验知识。这些模型由一个能量函数和一个任意的正的、严格递增的且二阶可微的函数组成,能量函数对小神经元群体之间的相互作用进行参数化,而后一个函数将群体模式的能量映射到其概率。我们表明:1)用非线性增强成对伊辛模型能准确描述视网膜神经节细胞的活动,其性能优于基于神经元总和活动的先前模型;2)群体临界的先验知识转化为对非线性形状的先验期望;3)非线性可以根据一个全局耦合系统的连续潜在变量来解释,我们可以从数据中推断其分布。我们的方法独立于底层系统的状态空间;因此,它可以应用于其他系统,如已知也表现出临界性的自然场景或蛋白质的氨基酸序列。