• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

使用同步辐射的蛋白质微晶学。

Protein microcrystallography using synchrotron radiation.

作者信息

Yamamoto Masaki, Hirata Kunio, Yamashita Keitaro, Hasegawa Kazuya, Ueno Go, Ago Hideo, Kumasaka Takashi

机构信息

Advanced Photon Technology Division, RIKEN SPring-8 Center, 1-1-1 Kouto, Sayo-cho, Sayo-gun, Hyogo 679-5148, Japan.

Precursory Research for Embryonic Science and Technology (PRESTO), Japan Science and Technology Agency, 4-1-8 Honcho, Kawaguchi, Saitama 332-0012, Japan.

出版信息

IUCrJ. 2017 Aug 8;4(Pt 5):529-539. doi: 10.1107/S2052252517008193. eCollection 2017 Sep 1.

DOI:10.1107/S2052252517008193
PMID:28989710
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5619846/
Abstract

The progress in X-ray microbeam applications using synchrotron radiation is beneficial to structure determination from macromolecular microcrystals such as small crystals. However, the high intensity of microbeams causes severe radiation damage, which worsens both the statistical quality of diffraction data and their resolution, and in the worst cases results in the failure of structure determination. Even in the event of successful structure determination, site-specific damage can lead to the misinterpretation of structural features. In order to overcome this issue, technological developments in sample handling and delivery, data-collection strategy and data processing have been made. For a few crystals with dimensions of the order of 10 µm, an elegant two-step scanning strategy works well. For smaller samples, the development of a novel method to analyze multiple isomorphous microcrystals was motivated by the success of serial femtosecond crystallography with X-ray free-electron lasers. This method overcame the radiation-dose limit in diffraction data collection by using a sufficient number of crystals. Here, important technologies and the future prospects for microcrystallography are discussed.

摘要

同步辐射X射线微束应用的进展有利于从小晶体等大分子微晶中确定结构。然而,微束的高强度会导致严重的辐射损伤,这会使衍射数据的统计质量及其分辨率都变差,在最坏的情况下会导致结构确定失败。即使在成功确定结构的情况下,位点特异性损伤也可能导致对结构特征的错误解读。为了克服这个问题,在样品处理与输送、数据收集策略和数据处理方面都取得了技术进展。对于一些尺寸约为10 µm的晶体,一种精巧的两步扫描策略效果良好。对于更小的样品,受X射线自由电子激光的串行飞秒晶体学成功的推动,一种分析多个同晶型微晶的新方法得以发展。该方法通过使用足够数量的晶体克服了衍射数据收集时的辐射剂量限制。在此,讨论微晶学的重要技术和未来前景。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ed95/5619846/4abd0c06efd8/m-04-00529-fig7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ed95/5619846/7eb04e6aeeb1/m-04-00529-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ed95/5619846/a7a352381a37/m-04-00529-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ed95/5619846/d80ff5a1e434/m-04-00529-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ed95/5619846/3cba61637e20/m-04-00529-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ed95/5619846/7092e69fd38c/m-04-00529-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ed95/5619846/f49d87bad0ec/m-04-00529-fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ed95/5619846/4abd0c06efd8/m-04-00529-fig7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ed95/5619846/7eb04e6aeeb1/m-04-00529-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ed95/5619846/a7a352381a37/m-04-00529-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ed95/5619846/d80ff5a1e434/m-04-00529-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ed95/5619846/3cba61637e20/m-04-00529-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ed95/5619846/7092e69fd38c/m-04-00529-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ed95/5619846/f49d87bad0ec/m-04-00529-fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ed95/5619846/4abd0c06efd8/m-04-00529-fig7.jpg

相似文献

1
Protein microcrystallography using synchrotron radiation.使用同步辐射的蛋白质微晶学。
IUCrJ. 2017 Aug 8;4(Pt 5):529-539. doi: 10.1107/S2052252517008193. eCollection 2017 Sep 1.
2
Serial crystallography on in vivo grown microcrystals using synchrotron radiation.利用同步辐射对体内生长的微晶体进行连续晶体学研究。
IUCrJ. 2014 Feb 10;1(Pt 2):87-94. doi: 10.1107/S2052252513033939. eCollection 2014 Mar 1.
3
Solving protein structure from sparse serial microcrystal diffraction data at a storage-ring synchrotron source.利用储存环同步辐射源的稀疏串行微晶衍射数据解析蛋白质结构。
IUCrJ. 2018 Jul 20;5(Pt 5):548-558. doi: 10.1107/S205225251800903X. eCollection 2018 Sep 1.
4
Preparation and Delivery of Protein Microcrystals in Lipidic Cubic Phase for Serial Femtosecond Crystallography.用于串联飞秒晶体学的脂质立方相中蛋白质微晶的制备与递送
J Vis Exp. 2016 Sep 20(115):54463. doi: 10.3791/54463.
5
Lifetimes and spatio-temporal response of protein crystals in intense X-ray microbeams.强X射线微束中蛋白质晶体的寿命及时空响应
IUCrJ. 2017 Oct 13;4(Pt 6):785-794. doi: 10.1107/S2052252517013495. eCollection 2017 Nov 1.
6
Development of a dose-limiting data collection strategy for serial synchrotron rotation crystallography.用于串行同步加速器旋转晶体学的剂量限制数据收集策略的开发。
J Synchrotron Radiat. 2017 Jan 1;24(Pt 1):29-41. doi: 10.1107/S1600577516016362.
7
Protein crystal structure from non-oriented, single-axis sparse X-ray data.从非定向、单轴稀疏 X 射线数据中解析蛋白质晶体结构。
IUCrJ. 2016 Jan 1;3(Pt 1):43-50. doi: 10.1107/S2052252515018795.
8
Serial millisecond crystallography of membrane and soluble protein microcrystals using synchrotron radiation.利用同步辐射对膜蛋白和可溶性蛋白微晶进行系列毫秒级晶体学研究。
IUCrJ. 2017 May 24;4(Pt 4):439-454. doi: 10.1107/S205225251700570X. eCollection 2017 Jul 1.
9
Room-temperature serial crystallography at synchrotron X-ray sources using slowly flowing free-standing high-viscosity microstreams.利用缓慢流动的独立高粘度微流在同步加速器X射线源处进行室温串行晶体学研究。
Acta Crystallogr D Biol Crystallogr. 2015 Feb;71(Pt 2):387-97. doi: 10.1107/S1399004714026327. Epub 2015 Jan 23.
10
Serial crystallography using synchrotron radiation.利用同步辐射进行连续晶体学研究。
IUCrJ. 2014 Feb 28;1(Pt 2):84-6. doi: 10.1107/S2052252514000499. eCollection 2014 Mar 1.

引用本文的文献

1
Intracellular protein crystallization in living insect cells.活昆虫细胞内的蛋白质结晶
FEBS Open Bio. 2025 Apr;15(4):551-562. doi: 10.1002/2211-5463.70020. Epub 2025 Mar 28.
2
Macromolecular crystallography at SPring-8 and SACLA.在日本兵库县的SPring-8和日本埼玉县的SACLA进行的大分子晶体学研究。
J Synchrotron Radiat. 2025 Mar 1;32(Pt 2):304-314. doi: 10.1107/S1600577525000657. Epub 2025 Feb 18.
3
Useful experimental aspects of small-wedge synchrotron crystallography for accurate structure analysis of protein molecules.

本文引用的文献

1
Drop-on-demand sample delivery for studying biocatalysts in action at X-ray free-electron lasers.按需滴样,用于在 X 射线自由电子激光下研究生物催化剂的反应过程。
Nat Methods. 2017 Apr;14(4):443-449. doi: 10.1038/nmeth.4195. Epub 2017 Feb 27.
2
P13, the EMBL macromolecular crystallography beamline at the low-emittance PETRA III ring for high- and low-energy phasing with variable beam focusing.P13,位于低发射度PETRA III环上的欧洲分子生物学实验室大分子晶体学光束线,用于可变光束聚焦的高能和低能相位分析。
J Synchrotron Radiat. 2017 Jan 1;24(Pt 1):323-332. doi: 10.1107/S1600577516016465.
3
Development of a dose-limiting data collection strategy for serial synchrotron rotation crystallography.
用于蛋白质分子精确结构分析的小楔形同步加速器晶体学的有用实验方面。
Acta Crystallogr D Struct Biol. 2025 Jan 1;81(Pt 1):22-37. doi: 10.1107/S2059798324011987.
4
Bridging the microscopic divide: a comprehensive overview of micro-crystallization and in vivo crystallography.弥合微观差异:微结晶和体内结晶学的全面概述。
IUCrJ. 2024 Jul 1;11(Pt 4):476-485. doi: 10.1107/S205225252400513X.
5
A streamlined approach to structure elucidation using in cellulo crystallized recombinant proteins, InCellCryst.使用细胞内结晶重组蛋白(InCellCryst)进行结构解析的简化方法。
Nat Commun. 2024 Feb 24;15(1):1709. doi: 10.1038/s41467-024-45985-7.
6
Electron counting with direct electron detectors in MicroED.微电镜直接电子探测器的电子计数。
Structure. 2023 Dec 7;31(12):1504-1509.e1. doi: 10.1016/j.str.2023.10.011. Epub 2023 Nov 21.
7
Assessing the prospect of XAFS experiments of metalloproteins under in vivo conditions at Indus-2 synchrotron facility, India.评估在印度同步加速器设施 Indus-2 下对金属蛋白进行体内条件下的 XAFS 实验的前景。
J Synchrotron Radiat. 2023 Mar 1;30(Pt 2):449-456. doi: 10.1107/S1600577522011791. Epub 2023 Jan 13.
8
xia2.multiplex: a multi-crystal data-analysis pipeline.xia2.multiplex:一个多晶体数据分析管道。
Acta Crystallogr D Struct Biol. 2022 Jun 1;78(Pt 6):752-769. doi: 10.1107/S2059798322004399. Epub 2022 May 18.
9
3D electron diffraction for structure determination of small-molecule nanocrystals: A possible breakthrough for the pharmaceutical industry.3D 电子衍射技术在小分子纳米晶体结构测定中的应用:制药行业的一项潜在突破。
Wiley Interdiscip Rev Nanomed Nanobiotechnol. 2022 Sep;14(5):e1810. doi: 10.1002/wnan.1810. Epub 2022 May 20.
10
Experimental evidence for the benefits of higher X-ray energies for macromolecular crystallography.更高X射线能量对大分子晶体学有益的实验证据。
IUCrJ. 2021 Sep 9;8(Pt 6):896-904. doi: 10.1107/S2052252521008423. eCollection 2021 Nov 1.
用于串行同步加速器旋转晶体学的剂量限制数据收集策略的开发。
J Synchrotron Radiat. 2017 Jan 1;24(Pt 1):29-41. doi: 10.1107/S1600577516016362.
4
A three-dimensional movie of structural changes in bacteriorhodopsin.三维电影中的紫膜蛋白结构变化。
Science. 2016 Dec 23;354(6319):1552-1557. doi: 10.1126/science.aah3497.
5
A multicrystal diffraction data-collection approach for studying structural dynamics with millisecond temporal resolution.一种用于以毫秒时间分辨率研究结构动力学的多晶体衍射数据收集方法。
IUCrJ. 2016 Oct 26;3(Pt 6):393-401. doi: 10.1107/S2052252516016304. eCollection 2016 Nov 1.
6
EIGER detector: application in macromolecular crystallography.EIGER 探测器:在大分子晶体学中的应用。
Acta Crystallogr D Struct Biol. 2016 Sep;72(Pt 9):1036-48. doi: 10.1107/S2059798316012304. Epub 2016 Aug 31.
7
Merging of synchrotron serial crystallographic data by a genetic algorithm.利用遗传算法进行同步辐射序列晶体学数据的合并。
Acta Crystallogr D Struct Biol. 2016 Sep;72(Pt 9):1026-35. doi: 10.1107/S2059798316012079. Epub 2016 Aug 18.
8
Identification of rogue datasets in serial crystallography.串行晶体学中异常数据集的识别。
J Appl Crystallogr. 2016 Apr 18;49(Pt 3):1021-1028. doi: 10.1107/S1600576716005471. eCollection 2016 Jun 1.
9
Room-temperature macromolecular crystallography using a micro-patterned silicon chip with minimal background scattering.使用具有最小背景散射的微图案硅芯片进行室温大分子晶体学研究。
J Appl Crystallogr. 2016 May 23;49(Pt 3):968-975. doi: 10.1107/S1600576716006348. eCollection 2016 Jun 1.
10
Fast two-dimensional grid and transmission X-ray microscopy scanning methods for visualizing and characterizing protein crystals.用于可视化和表征蛋白质晶体的快速二维网格和透射X射线显微镜扫描方法。
J Appl Crystallogr. 2016 May 16;49(Pt 3):944-952. doi: 10.1107/S1600576716006233. eCollection 2016 Jun 1.