Research Unit Analytical BioGeoChemistry, Helmholtz Zentrum München, Neuherberg, Germany.
Center for Interdisciplinary Cardiovascular Science (CICS), Brigham and Women's Hospital and Harvard Medical School, Boston, Massachusetts, USA.
mBio. 2017 Oct 17;8(5):e01343-17. doi: 10.1128/mBio.01343-17.
Diet can influence the composition of the human microbiome, and yet relatively few dietary ingredients have been systematically investigated with respect to their impact on the functional potential of the microbiome. Dietary resistant starch (RS) has been shown to have health benefits, but we lack a mechanistic understanding of the metabolic processes that occur in the gut during digestion of RS. Here, we collected samples during a dietary crossover study with diets containing large or small amounts of RS. We determined the impact of RS on the gut microbiome and metabolic pathways in the gut, using a combination of "omics" approaches, including 16S rRNA gene sequencing, metaproteomics, and metabolomics. This multiomics approach captured changes in the abundance of specific bacterial species, proteins, and metabolites after a diet high in resistant starch (HRS), providing key insights into the influence of dietary interventions on the gut microbiome. The combined data showed that a high-RS diet caused an increase in the ratio of to , including increases in relative abundances of some specific members of the and concurrent increases in enzymatic pathways and metabolites involved in lipid metabolism in the gut. This work was undertaken to obtain a mechanistic understanding of the complex interplay between diet and the microorganisms residing in the intestine. Although it is known that gut microbes play a key role in digestion of the food that we consume, the specific contributions of different microorganisms are not well understood. In addition, the metabolic pathways and resultant products of metabolism during digestion are highly complex. To address these knowledge gaps, we used a combination of molecular approaches to determine the identities of the microorganisms in the gut during digestion of dietary starch as well as the metabolic pathways that they carry out. Together, these data provide a more complete picture of the function of the gut microbiome in digestion, including links between an RS diet and lipid metabolism and novel linkages between specific gut microbes and their metabolites and proteins produced in the gut.
饮食可以影响人类微生物组的组成,但相对较少的饮食成分已被系统地研究其对微生物组功能潜力的影响。膳食纤维抗性淀粉 (RS) 已被证明具有健康益处,但我们缺乏对 RS 消化过程中肠道中发生的代谢过程的机制理解。在这里,我们在含有大量或少量 RS 的饮食交叉研究中收集了样本。我们使用包括 16S rRNA 基因测序、代谢组学和代谢组学在内的“组学”方法组合,确定 RS 对肠道微生物组和肠道代谢途径的影响。这种多组学方法捕捉到高抗性淀粉 (HRS) 饮食后特定细菌种类、蛋白质和代谢物丰度的变化,为饮食干预对肠道微生物组的影响提供了关键见解。综合数据表明,高 RS 饮食导致 与 的比例增加,包括 和一些特定成员的相对丰度增加,同时增加了肠道中涉及脂质代谢的酶途径和代谢物。这项工作旨在深入了解饮食和肠道中微生物之间复杂的相互作用机制。尽管已知肠道微生物在我们所消耗的食物消化中起着关键作用,但不同微生物的具体贡献尚不清楚。此外,消化过程中的代谢途径和产生的代谢产物非常复杂。为了弥补这些知识空白,我们使用了分子方法的组合来确定在消化膳食淀粉过程中肠道中微生物的身份以及它们执行的代谢途径。这些数据共同提供了肠道微生物组在消化过程中的功能的更完整的图片,包括 RS 饮食与脂质代谢之间的联系以及特定肠道微生物及其在肠道中产生的代谢物和蛋白质之间的新联系。
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