Cho Hayoung, Heo Jun, Ahn Jae-Hyung, Weon Hang-Yeon, Kim Jeong-Seon, Kwon Soon-Wo, Kim Soo-Jin
Agricultural Microbiology Division, National Institute of Agricultural Sciences, Rural Development Administration, Wanju-gun, Jeollabuk-do 55365, Republic of Korea.
Department of Biological Sciences, Chonbuk National University, Jeonju-si, Jeollabuk-do 54896, Republic of Korea.
Int J Syst Evol Microbiol. 2017 Dec;67(12):5046-5050. doi: 10.1099/ijsem.0.002410. Epub 2017 Oct 23.
The taxonomic position of a bacterial strain designated T16R-228, isolated from a rhizosphere soil sample of a tomato plant collected from a farm in Buyeo, Chungcheongnam-do, Republic of Korea, was determined using a polyphasic approach. On the basis of morphological, genetic and chemotaxonomic characteristics, it was determined to belong to the genus Paenibacillus. It was an aerobic, Gram-stain-positive, non-motile, catalase-negative, oxidase-negative rod with peritrichous flagella. The polar lipids were diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, hydroxyl- phosphatidylethanolamine and one unidentified polar lipid. Menaquiones were MK-7. Predominant cellular fatty acids were anteiso-C15 : 0, C16 : 0 and iso-C16 : 0. DNA G+C content was 56.8 mol%. The phylogenetic tree constructed based on the 16S rRNA gene sequences showed the strain formed a clade with P. mucilaginosus VKPM B-7519, P. edaphicus T7, P. ehimensis KCTC 3748, P. koreensis YC300, P. tianmuensis B27 and P. elgii SD17, showing the highest sequence similarity with P. mucilaginosus VKPM B-7519 (96.5 %). The polyphasic data supported that strain T16R-228 was clearly distinguished from its closely related species and represents a novel species of the genus Paenibacillus for which the name Paenibacillus solanacearum is proposed. The type strain is T16R-228 (=KACC 18654=NBRC 111896).
采用多相分类法确定了从韩国忠清南道扶余郡一个农场采集的番茄植物根际土壤样品中分离出的一株名为T16R - 228的细菌菌株的分类地位。基于形态、遗传和化学分类学特征,确定其属于芽孢杆菌属。它是需氧、革兰氏染色阳性、不运动、过氧化氢酶阴性、氧化酶阴性的杆菌,有周生鞭毛。极性脂类为双磷脂酰甘油、磷脂酰乙醇胺、磷脂酰甘油、羟基磷脂酰乙醇胺和一种未鉴定的极性脂类。甲基萘醌为MK - 7。主要的细胞脂肪酸为anteiso - C15 : 0、C16 : 0和iso - C16 : 0。DNA G + C含量为56.8 mol%。基于16S rRNA基因序列构建的系统发育树显示,该菌株与黏液芽孢杆菌VKPM B - 7519、土壤芽孢杆菌T7、江户芽孢杆菌KCTC 3748、韩国芽孢杆菌YC300、天目山芽孢杆菌B27和埃尔吉芽孢杆菌SD17形成一个分支,与黏液芽孢杆菌VKPM B - 7519的序列相似性最高(96.5 %)。多相数据支持菌株T16R - 228与其近缘物种明显不同,代表芽孢杆菌属的一个新物种,为此提出名为茄科芽孢杆菌的名称。模式菌株为T16R - 228(=KACC 18654=NBRC 1