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氟苏氨酸 tRNA 脱氨酶可防止有机氟生产菌中的错译。

Fluorothreonyl-tRNA deacylase prevents mistranslation in the organofluorine producer .

机构信息

Department of Chemistry, University of California, Berkeley, CA 94720-1460.

Department of Chemistry, University of California, Berkeley, CA 94720-1460;

出版信息

Proc Natl Acad Sci U S A. 2017 Nov 7;114(45):11920-11925. doi: 10.1073/pnas.1711482114. Epub 2017 Oct 23.

Abstract

Fluorine is an element with unusual properties that has found significant utility in the design of synthetic small molecules, ranging from therapeutics to materials. In contrast, only a few fluorinated compounds made by living organisms have been found to date, most of which derive from the fluoroacetate/fluorothreonine biosynthetic pathway first discovered in While fluoroacetate has long been known to act as an inhibitor of the tricarboxylic acid cycle, the fate of the amino acid fluorothreonine is still not well understood. Here, we show that fluorothreonine can be misincorporated into protein in place of the proteinogenic amino acid threonine. We have identified two conserved proteins from the organofluorine biosynthetic locus, FthB and FthC, that are involved in managing fluorothreonine toxicity. Using a combination of biochemical, genetic, physiological, and proteomic studies, we show that FthB is a -acting transfer RNA (tRNA) editing protein, which hydrolyzes fluorothreonyl-tRNA 670-fold more efficiently than threonyl-RNA, and assign a role to FthC in fluorothreonine transport. While -acting tRNA editing proteins have been found to counteract the misacylation of tRNA with commonly occurring near-cognate amino acids, their role has yet to be described in the context of secondary metabolism. In this regard, the recruitment of tRNA editing proteins to biosynthetic clusters may have enabled the evolution of pathways to produce specialized amino acids, thereby increasing the diversity of natural product structure while also attenuating the risk of mistranslation that would ensue.

摘要

氟是一种具有特殊性质的元素,在合成小分子的设计中得到了广泛的应用,范围从治疗药物到材料。相比之下,到目前为止,只发现了少数由生物体合成的含氟化合物,其中大多数源自于首先在 中发现的氟乙酸/氟苏氨酸生物合成途径。虽然氟乙酸早已被认为是三羧酸循环的抑制剂,但氨基酸氟苏氨酸的命运仍未得到很好的理解。在这里,我们表明氟苏氨酸可以错误地掺入蛋白质中,取代蛋白质氨基酸苏氨酸。我们从有机氟生物合成基因座中鉴定出两个保守的蛋白质,FthB 和 FthC,它们参与管理氟苏氨酸毒性。我们使用生化、遗传、生理和蛋白质组学研究的组合,表明 FthB 是一种 - 作用的转移 RNA(tRNA)编辑蛋白,它对氟苏氨酸-tRNA 的水解效率比苏氨酸-RNA 高 670 倍,并将 FthC 的作用分配给氟苏氨酸的运输。虽然 - 作用的 tRNA 编辑蛋白已被发现可以抵消 tRNA 与常见的近同功氨基酸的错误酰化,但它们在次生代谢物中的作用尚未被描述。在这方面,将 tRNA 编辑蛋白招募到生物合成簇中可能使产生专门氨基酸的途径得以进化,从而增加天然产物结构的多样性,同时减轻随之而来的翻译错误的风险。

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