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半胱氨酸键合加速四血红素蛋白 STC 中的电子传递。

Cysteine Linkages Accelerate Electron Flow through Tetra-Heme Protein STC.

机构信息

Department of Physics and Astronomy, University College London , London WC1E 6BT, U.K.

Institute for Advanced Study, Technische Universität München , Lichtenbergstrasse 2a, D-85748 Garching, Germany.

出版信息

J Am Chem Soc. 2017 Dec 6;139(48):17237-17240. doi: 10.1021/jacs.7b08831. Epub 2017 Nov 17.

DOI:10.1021/jacs.7b08831
PMID:29119787
Abstract

Multi-heme proteins have attracted much attention recently due to their prominent role in mediating extracellular electron transport (ET), but one of their key fundamental properties, the rate constants for ET between the constituent heme groups, have so far evaded experimental determination. Here we report the set of heme-heme theoretical ET rate constants that define electron flow in the tetra-heme protein STC by combining a novel projector-operator diabatization approach for electronic coupling calculation with molecular dynamics simulation of ET free energies. On the basis of our calculations, we find that the protein limited electron flux through STC in the thermodynamic downhill direction (heme 1→4) is ∼3 × 10 s. We find that cysteine linkages inserting in the space between the two terminal heme pairs 1-2 and 3-4 significantly enhance the overall electron flow, by a factor of about 37, due to weak mixing of the sulfur 3p orbital with the Fe-heme d orbitals. While the packing density model, and to a higher degree, the pathway model of biological ET partly capture the predicted rate enhancements, our study highlights the importance of the atomistic and chemical nature of the tunneling medium at short biological tunneling distances. Cysteine linkages are likely to enhance electron flow also in the larger deca-heme proteins MtrC and MtrF, where heme-heme motifs with sub-optimal edge-to-edge distances are used to shuttle electrons in multiple directions.

摘要

多血红素蛋白因其在介导细胞外电子传递 (ET) 方面的突出作用而引起了广泛关注,但它们的一个关键基本性质,即组成血红素基团之间的 ET 速率常数,迄今为止仍无法通过实验确定。在这里,我们报告了一套血红素-血红素理论 ET 速率常数,通过结合一种新的投影算子键合化方法来计算电子耦合,并对 ET 自由能进行分子动力学模拟,从而定义了四血红素蛋白 STC 中的电子流。基于我们的计算,我们发现蛋白质在热力学下坡方向(血红素 1→4)限制了通过 STC 的电子通量约为 3×10 s。我们发现,由于硫 3p 轨道与 Fe-血红素 d 轨道的弱混合,在两个末端血红素对 1-2 和 3-4 之间的空间中插入半胱氨酸键会显著增强整体电子流,增强幅度约为 37 倍。虽然包装密度模型,以及在更高程度上,生物 ET 的路径模型部分捕捉到了预测的速率增强,但我们的研究强调了短生物隧道距离下隧道介质的原子和化学性质的重要性。半胱氨酸键也可能增强更大的十血红素蛋白 MtrC 和 MtrF 中的电子流,其中使用具有次优边缘到边缘距离的血红素-血红素基序来在多个方向上传递电子。

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