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Pourbaix 图、质子耦合电子转移和蛋白质色氨酸自由基的衰减动力学:比较结构表征的 αW 和 αY 蛋白内生成的 W 和 Y 的氧化还原性质。

Pourbaix Diagram, Proton-Coupled Electron Transfer, and Decay Kinetics of a Protein Tryptophan Radical: Comparing the Redox Properties of W and Y Generated Inside the Structurally Characterized αW and αY Proteins.

机构信息

Department of Biochemistry and Biophysics, University of Pennsylvania Perelman School of Medicine , Philadelphia, Pennsylvania 19104, United States.

Department of Chemistry, Ångström Laboratory, Uppsala University , Box 523, SE-75120 Uppsala, Sweden.

出版信息

J Am Chem Soc. 2018 Jan 10;140(1):185-192. doi: 10.1021/jacs.7b08032. Epub 2017 Dec 19.

Abstract

Protein-based "hole" hopping typically involves spatially arranged redox-active tryptophan or tyrosine residues. Thermodynamic information is scarce for this type of process. The well-structured αW model protein was studied by protein film square wave voltammetry and transient absorption spectroscopy to obtain a comprehensive thermodynamic and kinetic description of a buried tryptophan residue. A Pourbaix diagram, correlating thermodynamic potentials (E°') with pH, is reported for W in αW and compared to equivalent data recently presented for Y in αY ( Ravichandran , K. R. ; Zong , A. B. ; Taguchi , A. T. ; Nocera , D. G. ; Stubbe , J. ; Tommos , C. J. Am. Chem. Soc. 2017 , 139 , 2994 - 3004 ). The αW Pourbaix diagram displays a pK of 3.4, a E°'(W(N/NH)) of 1293 mV, and a E°'(W(N/NH); pH 7.0) of 1095 ± 4 mV versus the normal hydrogen electrode. W(N/NH) is 109 ± 4 mV more oxidizing than Y(O/OH) at pH 5.4-10. In the voltammetry measurements, W oxidation-reduction occurs on a time scale of about 4 ms and is coupled to the release and subsequent uptake of one full proton to and from bulk. Kinetic analysis further shows that W oxidation likely involves pre-equilibrium electron transfer followed by proton transfer to a water or small water cluster as the primary acceptor. A well-resolved absorption spectrum of W is presented, and analysis of decay kinetics show that W persists ∼10 times longer than aqueous W due to significant stabilization by the protein. The redox characteristics of W and Y are discussed relative to global and local protein properties.

摘要

基于蛋白质的“孔跳跃”通常涉及空间排列的氧化还原活性色氨酸或酪氨酸残基。对于这种类型的过程,热力学信息很少。通过蛋白膜方波伏安法和瞬态吸收光谱研究了结构良好的αW 模型蛋白,以获得对埋藏色氨酸残基的综合热力学和动力学描述。报道了αW 中 W 的与热力学势(E°')与 pH 值相关的 Pourbaix 图,并将其与最近为αY 中的 Y 提出的等效数据进行了比较(Ravichandran, K. R. ; Zong, A. B. ; Taguchi, A. T. ; Nocera, D. G. ; Stubbe, J. ; Tommos, C. J. Am. Chem. Soc. 2017, 139, 2994 - 3004 )。αW Pourbaix 图显示 pK 为 3.4,E°'(W(N/NH))为 1293 mV,E°'(W(N/NH);pH 7.0)为 1095 ± 4 mV 相对于标准氢电极。在 pH 5.4-10 时,W(N/NH)比 Y(O/OH)氧化 109 ± 4 mV。在伏安测量中,W 的氧化还原发生在约 4 ms 的时间尺度上,并且与一个完整质子从体相释放和随后吸收到体相耦合。动力学分析进一步表明,W 的氧化可能涉及预平衡电子转移,然后质子转移到水或小的水簇作为主要受体。呈现了 W 的良好分辨的吸收光谱,并且分析衰减动力学表明,由于蛋白质的显著稳定作用,W 比水性 W 持续存在约 10 倍的时间。讨论了 W 和 Y 的氧化还原特性与全局和局部蛋白质特性的关系。

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