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OCDD:一个肥胖与共病疾病数据库。

OCDD: an obesity and co-morbid disease database.

作者信息

Ray Indrani, Bhattacharya Anindya, De Rajat K

机构信息

Machine Intelligence Unit, Indian Statistical Institute, 203 B.T. Road, Kolkata, 700108 India.

Department of Computer Science and Engineering, University of California, 9500 Gilman Drive, La Jolla, San Diego, 92093 CA USA.

出版信息

BioData Min. 2017 Nov 21;10:33. doi: 10.1186/s13040-017-0153-5. eCollection 2017.

Abstract

BACKGROUND

Obesity is a medical condition that is known for increased body mass index (BMI). It is also associated with chronic low level inflammation. Obesity disrupts the immune-metabolic homeostasis by changing the secretion of adipocytes. This affects the end-organs, and gives rise to several diseases including type 2 diabetes, asthma, non-alcoholic fatty liver diseases and cancers. These diseases are known as co-morbid diseases. Several studies have explored the underlying molecular mechanisms of developing obesity associated comorbid diseases. To understand the development and progression of diseases associated with obesity, we need a detailed scenario of gene interactions and the distribution of the responsible genes in human system.

RESULTS

Obesity and Co-morbid Disease Database (OCDD) is designed for relating obesity and its co-morbid diseases using literature mining, and computational and systems biology approaches. OCDD is aimed to investigate the genes associated with comorbidity. Several existing databases have been used to extract molecular interactions and functional annotations of each gene. The degree of co-morbid associations has been measured and made available to the users. The database is available at http://www.isical.ac.in/~systemsbiology/OCDD/home.php.

CONCLUSIONS

The main objective of the database is to derive the relations among the genes that are involved in both obesity and its co-morbid diseases. Functional annotation of common genes, gene interaction networks and key driver analyses have made the database a valuable and comprehensive resource for investigating the causal links between obesity and co-morbid diseases.

摘要

背景

肥胖是一种以体重指数(BMI)升高为特征的医学状况。它还与慢性低度炎症相关。肥胖通过改变脂肪细胞的分泌破坏免疫代谢稳态。这会影响终末器官,并引发包括2型糖尿病、哮喘、非酒精性脂肪性肝病和癌症在内的多种疾病。这些疾病被称为共病。多项研究探讨了肥胖相关共病发生的潜在分子机制。为了解与肥胖相关疾病的发生和发展,我们需要人类系统中基因相互作用以及相关基因分布的详细情况。

结果

肥胖与共病数据库(OCDD)旨在通过文献挖掘以及计算生物学和系统生物学方法关联肥胖及其共病。OCDD旨在研究与共病相关的基因。已使用多个现有数据库来提取每个基因的分子相互作用和功能注释。共病关联程度已被测量并提供给用户。该数据库可在http://www.isical.ac.in/~systemsbiology/OCDD/home.php获取。

结论

该数据库的主要目标是推导参与肥胖及其共病的基因之间的关系。常见基因的功能注释、基因相互作用网络和关键驱动因素分析使该数据库成为研究肥胖与共病之间因果联系的宝贵且全面的资源。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/01ca/5697160/103e728a9743/13040_2017_153_Fig1_HTML.jpg

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