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铁固氮酶催化氮还原的机制涉及氢的还原消除。

Mechanism of N Reduction Catalyzed by Fe-Nitrogenase Involves Reductive Elimination of H.

作者信息

Harris Derek F, Lukoyanov Dmitriy A, Shaw Sudipta, Compton Phil, Tokmina-Lukaszewska Monika, Bothner Brian, Kelleher Neil, Dean Dennis R, Hoffman Brian M, Seefeldt Lance C

机构信息

Department of Chemistry and Biochemistry, Utah State University , Logan, Utah 84322, United States.

Departments of Chemistry and Molecular Biosciences, Northwestern University , Evanston, Illinois 60208, United States.

出版信息

Biochemistry. 2018 Feb 6;57(5):701-710. doi: 10.1021/acs.biochem.7b01142. Epub 2018 Jan 17.

Abstract

Of the three forms of nitrogenase (Mo-nitrogenase, V-nitrogenase, and Fe-nitrogenase), Fe-nitrogenase has the poorest ratio of N reduction relative to H evolution. Recent work on the Mo-nitrogenase has revealed that reductive elimination of two bridging Fe-H-Fe hydrides on the active site FeMo-cofactor to yield H is a key feature in the N reduction mechanism. The N reduction mechanism for the Fe-nitrogenase active site FeFe-cofactor was unknown. Here, we have purified both component proteins of the Fe-nitrogenase system, the electron-delivery Fe protein (AnfH) plus the catalytic FeFe protein (AnfDGK), and established its mechanism of N reduction. Inductively coupled plasma optical emission spectroscopy and mass spectrometry show that the FeFe protein component does not contain significant amounts of Mo or V, thus ruling out a requirement of these metals for N reduction. The fully functioning Fe-nitrogenase system was found to have specific activities for N reduction (1 atm) of 181 ± 5 nmol NH min mg FeFe protein, for proton reduction (in the absence of N) of 1085 ± 41 nmol H min mg FeFe protein, and for acetylene reduction (0.3 atm) of 306 ± 3 nmol CH min mg FeFe protein. Under turnover conditions, N reduction is inhibited by H and the enzyme catalyzes the formation of HD when presented with N and D. These observations are explained by the accumulation of four reducing equivalents as two metal-bound hydrides and two protons at the FeFe-cofactor, with activation for N reduction occurring by reductive elimination of H.

摘要

在三种固氮酶形式(钼固氮酶、钒固氮酶和铁固氮酶)中,铁固氮酶相对于氢生成的氮还原比率最低。最近对钼固氮酶的研究表明,在活性位点铁钼辅因子上还原消除两个桥连的铁 - 氢 - 铁氢化物以产生氢气是氮还原机制的一个关键特征。铁固氮酶活性位点铁铁辅因子的氮还原机制尚不清楚。在这里,我们纯化了铁固氮酶系统的两种组成蛋白,电子传递铁蛋白(AnfH)和催化铁铁蛋白(AnfDGK),并确定了其氮还原机制。电感耦合等离子体发射光谱和质谱表明,铁铁蛋白组分不含大量的钼或钒,因此排除了这些金属对氮还原的需求。发现功能完全正常的铁固氮酶系统对氮还原(1个大气压)的比活性为181±5 nmol NH₃ min⁻¹ mg⁻¹铁铁蛋白,对质子还原(无氮时)的比活性为1085±41 nmol H₂ min⁻¹ mg⁻¹铁铁蛋白,对乙炔还原(0.3个大气压)的比活性为306±3 nmol C₂H₄ min⁻¹ mg⁻¹铁铁蛋白。在周转条件下,氮还原受到氢气的抑制,并且当存在氮气和重氢时,该酶催化生成HD。这些观察结果可以通过在铁铁辅因子上积累四个还原当量,即两个金属结合的氢化物和两个质子来解释,氮还原的激活是通过氢的还原消除发生的。

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