Department of Chemistry and Biochemistry , Utah State University , Logan , Utah 84322 , United States.
Department of Chemistry , Northwestern University , Evanston , Illinois 60208 , United States.
Biochemistry. 2019 Jul 30;58(30):3293-3301. doi: 10.1021/acs.biochem.9b00468. Epub 2019 Jul 19.
Three genetically distinct, but structurally similar, isozymes of nitrogenase catalyze biological N reduction to 2NH: Mo-, V-, and Fe-nitrogenase, named respectively for the metal () in their active site metallocofactors (metal-ion composition, Fe). Studies of the Mo-enzyme have revealed key aspects of its mechanism for N binding and reduction. Central to this mechanism is accumulation of four electrons and protons on its active site metallocofactor, called FeMo-co, as metal bound hydrides to generate the key E(4H) ("Janus") state. N binding/reduction in this state is coupled to reductive elimination () of the two hydrides as H, the forward direction of a reductive-elimination/oxidative-addition () equilibrium. A recent study demonstrated that Fe-nitrogenase follows the same mechanism, as particularly evidenced by HD formation during turnover under N/D. Kinetic analysis revealed that Mo- and Fe-nitrogenases show similar rate constants for hydrogenase-like H formation by hydride protonolysis () but significant differences in the rate constant for H with N binding/reduction (). We now report that V-nitrogenase also exhibits HD formation during N/D turnover (and H inhibition of N reduction), thereby establishing the equilibrium as a universal mechanism for N binding and activation among the three nitrogenases. Kinetic analysis further reveals that differences in catalytic efficiencies do not stem from significant differences in the rate constant () for H production by the hydrogenase-like side reaction but directly arise from the differences in the rate constant () for the of H coupled to N binding/reduction, which decreases in the order Mo > V > Fe.
三种结构相似但基因不同的固氮酶同工酶(Mo、V 和 Fe 固氮酶)催化生物 N 还原为 2NH:分别命名为其活性位点金属络合物中的金属(Mo、V 和 Fe)。对 Mo 酶的研究揭示了其 N 结合和还原机制的关键方面。该机制的核心是在其活性位点金属络合物(FeMo-co)上积累四个电子和质子,形成关键的 E(4H)(“双面神”)状态,金属结合的氢化物将其还原。在这种状态下,N 的结合/还原与两个氢化物作为 H 的还原消除()偶联,这是还原消除/氧化加成()平衡的前向方向。最近的一项研究表明,Fe 固氮酶遵循相同的机制,特别是在 N/D 循环中形成 HD 得到特别证明。动力学分析表明,Mo 和 Fe 固氮酶在氢化物质子化()过程中显示出类似的氢酶样 H 形成的速率常数,但在 H 与 N 结合/还原的速率常数()方面存在显著差异。我们现在报告 V 固氮酶也在 N/D 循环中表现出 HD 形成(和 H 抑制 N 还原),从而确立了 平衡是三种固氮酶中 N 结合和激活的通用机制。动力学分析进一步表明,催化效率的差异不是源于氢酶样副反应中 H 生成的速率常数()的显著差异,而是直接源于与 N 结合/还原偶联的 H 的 速率常数()的差异,该速率常数按 Mo>V>Fe 的顺序降低。