Center for Communicable Disease Dynamics, Harvard T. H. Chan School of Public Health, Boston, Massachusetts 02115
Department of Epidemiology, Harvard T. H. Chan School of Public Health, Boston, Massachusetts 02115.
Genetics. 2018 Mar;208(3):1247-1260. doi: 10.1534/genetics.117.300662. Epub 2018 Jan 12.
The impact of epistasis on the evolution of multi-locus traits depends on recombination. While sexually reproducing eukaryotes recombine so frequently that epistasis between polymorphisms is not considered to play a large role in short-term adaptation, many bacteria also recombine, some to the degree that their populations are described as "panmictic" or "freely recombining." However, whether this recombination is sufficient to limit the ability of selection to act on epistatic contributions to fitness is unknown. We quantify homologous recombination in five bacterial pathogens and use these parameter estimates in a multilocus model of bacterial evolution with additive and epistatic effects. We find that even for highly recombining species (, or ), selection on weak interactions between distant mutations is nearly as efficient as for an asexual species, likely because homologous recombination typically transfers only short segments. However, for strong epistasis, bacterial recombination accelerates selection, with the dynamics dependent on the amount of recombination and the number of loci. Epistasis may thus play an important role in both the short- and long-term adaptive evolution of bacteria, and, unlike in eukaryotes, is not limited to strong effect sizes, closely linked loci, or other conditions that limit the impact of recombination.
上位性效应对多基因性状进化的影响取决于重组。虽然有性繁殖的真核生物如此频繁地重组,以至于多态性之间的上位性被认为在短期适应中不起重要作用,但许多细菌也会重组,有些细菌的种群被描述为“混合交配”或“自由重组”。然而,这种重组是否足以限制选择对适合度的上位性贡献的作用尚不清楚。我们量化了五个细菌病原体中的同源重组,并在一个具有加性和上位性效应的细菌进化的多基因座模型中使用这些参数估计。我们发现,即使对于高度重组的物种(, 或 ),对远距离突变之间弱相互作用的选择几乎与无性物种一样有效,这可能是因为同源重组通常只转移短片段。然而,对于强上位性,细菌重组会加速选择,其动态取决于重组的数量和基因座的数量。因此,上位性可能在细菌的短期和长期适应性进化中都起着重要作用,而且与真核生物不同,它不受限于强效应大小、紧密连锁的基因座或其他限制重组影响的条件。