From the Department of Chemistry and Biochemistry, Montana State University, Bozeman, Montana 59717-3400 and.
the Department of Chemistry and Biochemistry, North Dakota State University, Fargo, North Dakota 58108-6050.
J Biol Chem. 2018 Mar 16;293(11):3989-3999. doi: 10.1074/jbc.RA117.000830. Epub 2018 Feb 2.
The HO-dependent oxidative decarboxylation of coproheme III is the final step in the biosynthesis of heme in many microbes. However, the coproheme decarboxylase reaction mechanism is unclear. The structure of the decarboxylase in complex with coproheme III suggested that the substrate iron, reactive propionates, and an active-site tyrosine convey a net 2e/2H from each propionate to an activated form of HO Time-resolved EPR spectroscopy revealed that Tyr-145 formed a radical species within 30 s of the reaction of the enzyme-coproheme complex with HO This radical disappeared over the next 270 s, consistent with a catalytic intermediate. Use of the harderoheme III intermediate as substrate or substitutions of redox-active side chains (W198F, W157F, or Y113S) did not strongly affect the appearance or intensity of the radical spectrum measured 30 s after initiating the reaction with HO, nor did it change the ∼270 s required for the radical signal to recede to ≤10% of its initial intensity. These results suggested Tyr-145 as the site of a catalytic radical involved in decarboxylating both propionates. Tyr-145 was accompanied by partial loss of the initially present Fe(III) EPR signal intensity, consistent with the possible formation of Fe(IV)=O. Site-specifically deuterated coproheme gave rise to a kinetic isotope effect of ∼2 on the decarboxylation rate constant, indicating that cleavage of the propionate Cβ-H bond was partly rate-limiting. The inferred mechanism requires two consecutive hydrogen atom transfers, first from Tyr-145 to the substrate Fe/HO intermediate and then from the propionate Cβ-H to Tyr-145.
在许多微生物中,胆色素原 III 的 HO 依赖性氧化脱羧作用是血红素生物合成的最后一步。然而,脱羧酶反应机制尚不清楚。与胆色素原 III 复合物的脱羧酶结构表明,底物铁、反应性丙酸盐和活性部位酪氨酸将每个丙酸盐中的净 2e/2H 传递到 HO 的活化形式。时间分辨的 EPR 光谱显示,Tyr-145 在酶-胆色素原复合物与 HO 反应后的 30 秒内形成自由基物种。在接下来的 270 秒内,该自由基消失,与催化中间体一致。使用硬胆色素原 III 中间体制备底物或取代氧化还原活性侧链(W198F、W157F 或 Y113S)并没有强烈影响用 HO 引发反应 30 秒后测量的自由基光谱的出现或强度,也没有改变自由基信号消退到其初始强度的≤10%所需的约 270 秒。这些结果表明 Tyr-145 是参与脱羧两个丙酸盐的催化自由基的位点。Tyr-145 伴随着最初存在的 Fe(III)EPR 信号强度的部分损失,与可能形成 Fe(IV)=O 一致。特异性氘代胆色素原导致脱羧速率常数的动力学同位素效应约为 2,表明丙酸盐 Cβ-H 键的断裂部分是限速步骤。推断的机制需要连续两次氢原子转移,首先从 Tyr-145 到底物 Fe/HO 中间体,然后从丙酸盐 Cβ-H 到 Tyr-145。