• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

晶体学的未来走向如何?

Where is crystallography going?

机构信息

Science Division, Diamond Light Source, Harwell Science and Innovation Campus, Didcot OX11 0DE, England.

出版信息

Acta Crystallogr D Struct Biol. 2018 Feb 1;74(Pt 2):152-166. doi: 10.1107/S2059798317016709.

DOI:10.1107/S2059798317016709
PMID:29533241
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5947779/
Abstract

Macromolecular crystallography (MX) has been a motor for biology for over half a century and this continues apace. A series of revolutions, including the production of recombinant proteins and cryo-crystallography, have meant that MX has repeatedly reinvented itself to dramatically increase its reach. Over the last 30 years synchrotron radiation has nucleated a succession of advances, ranging from detectors to optics and automation. These advances, in turn, open up opportunities. For instance, a further order of magnitude could perhaps be gained in signal to noise for general synchrotron experiments. In addition, X-ray free-electron lasers offer to capture fragments of reciprocal space without radiation damage, and open up the subpicosecond regime of protein dynamics and activity. But electrons have recently stolen the limelight: so is X-ray crystallography in rude health, or will imaging methods, especially single-particle electron microscopy, render it obsolete for the most interesting biology, whilst electron diffraction enables structure determination from even the smallest crystals? We will lay out some information to help you decide.

摘要

大分子晶体学(MX)半个多世纪以来一直是生物学的动力,而且这种情况仍在继续。一系列的革命,包括重组蛋白的生产和 cryo-crystallography,意味着 MX 不断地自我革新,从而极大地扩大了其应用范围。在过去的 30 年中,同步加速器辐射引发了一系列的进展,从探测器到光学和自动化。这些进展反过来又为我们提供了机会。例如,在一般的同步加速器实验中,信号与噪声的比例可能会再提高一个数量级。此外,X 射线自由电子激光可以在不产生辐射损伤的情况下捕获倒易空间的片段,并开辟蛋白质动力学和活性的亚皮秒范围。但是,电子最近抢走了风头:那么 X 射线晶体学是处于健康状态,还是成像方法,特别是单粒子电子显微镜,将使其对最有趣的生物学变得过时,而电子衍射甚至可以从最小的晶体中确定结构?我们将提供一些信息来帮助您做出决定。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3647/5947779/ec766f1b03e3/d-74-00152-fig8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3647/5947779/2b05bf5edb82/d-74-00152-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3647/5947779/ccec8c1da831/d-74-00152-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3647/5947779/b3fbaff80372/d-74-00152-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3647/5947779/2ab7d9e774a9/d-74-00152-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3647/5947779/5e44a6dd2cda/d-74-00152-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3647/5947779/02c78f572c77/d-74-00152-fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3647/5947779/ce77c9f39509/d-74-00152-fig7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3647/5947779/ec766f1b03e3/d-74-00152-fig8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3647/5947779/2b05bf5edb82/d-74-00152-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3647/5947779/ccec8c1da831/d-74-00152-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3647/5947779/b3fbaff80372/d-74-00152-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3647/5947779/2ab7d9e774a9/d-74-00152-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3647/5947779/5e44a6dd2cda/d-74-00152-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3647/5947779/02c78f572c77/d-74-00152-fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3647/5947779/ce77c9f39509/d-74-00152-fig7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3647/5947779/ec766f1b03e3/d-74-00152-fig8.jpg

相似文献

1
Where is crystallography going?晶体学的未来走向如何?
Acta Crystallogr D Struct Biol. 2018 Feb 1;74(Pt 2):152-166. doi: 10.1107/S2059798317016709.
2
Dynamic Structural Biology Experiments at XFEL or Synchrotron Sources.XFEL 或同步辐射源的动态结构生物学实验。
Methods Mol Biol. 2021;2305:203-228. doi: 10.1007/978-1-0716-1406-8_11.
3
Advancements in macromolecular crystallography: from past to present.大分子晶体学的进展:从过去到现在。
Emerg Top Life Sci. 2021 May 14;5(1):127-149. doi: 10.1042/ETLS20200316.
4
Radiation Damage in Macromolecular Crystallography.大分子晶体学中的辐射损伤
Methods Mol Biol. 2017;1607:467-489. doi: 10.1007/978-1-4939-7000-1_20.
5
From femtoseconds to minutes: time-resolved macromolecular crystallography at XFELs and synchrotrons.从飞秒到分钟:XFEL 和同步加速器上的时间分辨的大分子晶体学。
Acta Crystallogr D Struct Biol. 2024 Feb 1;80(Pt 2):60-79. doi: 10.1107/S2059798323011002. Epub 2024 Jan 24.
6
Radiation damage to biological macromolecules∗.生物大分子的辐射损伤∗
Curr Opin Struct Biol. 2023 Oct;82:102662. doi: 10.1016/j.sbi.2023.102662. Epub 2023 Aug 11.
7
Serial macromolecular crystallography at ALBA Synchrotron Light Source.在 ALBA 同步辐射光源进行的串联大分子晶体学研究。
J Synchrotron Radiat. 2022 May 1;29(Pt 3):896-907. doi: 10.1107/S1600577522002508. Epub 2022 Apr 4.
8
Current advances in synchrotron radiation instrumentation for MX experiments.用于MX实验的同步辐射仪器的当前进展。
Arch Biochem Biophys. 2016 Jul 15;602:21-31. doi: 10.1016/j.abb.2016.03.021. Epub 2016 Apr 1.
9
Radiation damage to protein specimens from electron beam imaging and diffraction: a mini-review of anti-damage approaches, with special reference to synchrotron X-ray crystallography.电子束成像和衍射对蛋白质标本的辐射损伤:抗损伤方法的小型综述,特别提及同步加速器X射线晶体学
J Synchrotron Radiat. 2007 Jan;14(Pt 1):116-27. doi: 10.1107/S0909049506052307. Epub 2006 Dec 15.
10
FMX - the Frontier Microfocusing Macromolecular Crystallography Beamline at the National Synchrotron Light Source II.FMX - 国家同步辐射光源 II 上的前沿微聚焦大分子晶体学光束线。
J Synchrotron Radiat. 2021 Mar 1;28(Pt 2):650-665. doi: 10.1107/S1600577520016173. Epub 2021 Feb 25.

引用本文的文献

1
Where and how to house big data on small fragments.在小片段上存储大数据的位置及方式。
Nat Commun. 2025 May 5;16(1):4179. doi: 10.1038/s41467-025-59233-z.
2
Proteins and Peptides Studied In Silico and In Vivo for the Treatment of Diabetes Mellitus: A Systematic Review.糖尿病治疗的体内和体外研究的蛋白质和肽:系统评价。
Nutrients. 2024 Jul 24;16(15):2395. doi: 10.3390/nu16152395.
3
Systematic enhancement of protein crystallization efficiency by bulk lysine-to-arginine (KR) substitution.通过大量赖氨酸到精氨酸(KR)取代来系统地提高蛋白质结晶效率。

本文引用的文献

1
A poised fragment library enables rapid synthetic expansion yielding the first reported inhibitors of PHIP(2), an atypical bromodomain.一个平衡的片段文库能够实现快速的合成扩展,从而产生首个被报道的针对非典型溴结构域PHIP(2)的抑制剂。
Chem Sci. 2016 Mar 1;7(3):2322-2330. doi: 10.1039/c5sc03115j. Epub 2015 Dec 22.
2
Long-wavelength macromolecular crystallography - First successful native SAD experiment close to the sulfur edge.长波长大分子晶体学——首次在硫边缘附近成功进行的天然单波长反常散射实验。
Nucl Instrum Methods Phys Res B. 2017 Nov 15;411:12-16. doi: 10.1016/j.nimb.2016.12.005.
3
Model-based local density sharpening of cryo-EM maps.
Protein Sci. 2024 Mar;33(3):e4898. doi: 10.1002/pro.4898.
4
Dynophore-Based Approach in Virtual Screening: A Case of Human DNA Topoisomerase IIα.基于 Dynophore 的虚拟筛选方法:以人源 DNA 拓扑异构酶 IIα 为例。
Int J Mol Sci. 2021 Dec 15;22(24):13474. doi: 10.3390/ijms222413474.
5
The high-throughput production of membrane proteins.高通量生产膜蛋白。
Emerg Top Life Sci. 2021 Nov 12;5(5):655-663. doi: 10.1042/ETLS20210196.
6
FragMAXapp: crystallographic fragment-screening data-analysis and project-management system.FragMAXapp:晶体碎片筛选数据分析和项目管理系统。
Acta Crystallogr D Struct Biol. 2021 Jun 1;77(Pt 6):799-808. doi: 10.1107/S2059798321003818. Epub 2021 May 14.
7
Dynamic Structural Biology Experiments at XFEL or Synchrotron Sources.XFEL 或同步辐射源的动态结构生物学实验。
Methods Mol Biol. 2021;2305:203-228. doi: 10.1007/978-1-0716-1406-8_11.
8
IceBear: an intuitive and versatile web application for research-data tracking from crystallization experiment to PDB deposition.IceBear:一个直观且多功能的网页应用程序,用于从结晶实验到 PDB 沉积的数据跟踪。
Acta Crystallogr D Struct Biol. 2021 Feb 1;77(Pt 2):151-163. doi: 10.1107/S2059798320015223. Epub 2021 Jan 26.
9
Data-driven challenges and opportunities in crystallography.晶体学中数据驱动的挑战与机遇。
Emerg Top Life Sci. 2019 Aug 16;3(4):423-432. doi: 10.1042/ETLS20180177.
10
The low-cost Shifter microscope stage transforms the speed and robustness of protein crystal harvesting.低成本 Shifter 显微镜载物台可提高蛋白质晶体收获的速度和稳定性。
Acta Crystallogr D Struct Biol. 2021 Jan 1;77(Pt 1):62-74. doi: 10.1107/S2059798320014114.
基于模型的冷冻电镜密度图局部锐化。
Elife. 2017 Oct 23;6:e27131. doi: 10.7554/eLife.27131.
4
Protein structure determination by electron diffraction using a single three-dimensional nanocrystal.利用单个三维纳米晶体通过电子衍射测定蛋白质结构。
Acta Crystallogr D Struct Biol. 2017 Sep 1;73(Pt 9):738-748. doi: 10.1107/S2059798317010348. Epub 2017 Aug 15.
5
High-Resolution Cryo-EM Maps and Models: A Crystallographer's Perspective.高分辨率冷冻电镜图谱与模型:一位晶体学家的视角
Structure. 2017 Oct 3;25(10):1589-1597.e1. doi: 10.1016/j.str.2017.07.012. Epub 2017 Aug 31.
6
Structural basis for antibacterial peptide self-immunity by the bacterial ABC transporter McjD.细菌ABC转运蛋白McjD对抗菌肽自身免疫的结构基础
EMBO J. 2017 Oct 16;36(20):3062-3079. doi: 10.15252/embj.201797278. Epub 2017 Sep 1.
7
Structural biology: doors open at the European XFEL.结构生物学:欧洲X射线自由电子激光装置开启新机遇
Nat Methods. 2017 Aug 31;14(9):843-846. doi: 10.1038/nmeth.4394.
8
Cryo-EM structure of haemoglobin at 3.2 Å determined with the Volta phase plate.采用 Volta 相板技术获得的 3.2 Å 分辨率血影蛋白冷冻电镜结构。
Nat Commun. 2017 Jun 30;8:16099. doi: 10.1038/ncomms16099.
9
Taking the measure of MicroED.测量 MicroED。
Curr Opin Struct Biol. 2017 Oct;46:79-86. doi: 10.1016/j.sbi.2017.06.004. Epub 2017 Jun 22.
10
High-speed fixed-target serial virus crystallography.高速固定靶串行病毒晶体学
Nat Methods. 2017 Aug;14(8):805-810. doi: 10.1038/nmeth.4335. Epub 2017 Jun 19.