• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

相似文献

1
Reentrant Phase Transitions and Non-Equilibrium Dynamics in Membraneless Organelles.无膜细胞器中的折返相变与非平衡动力学
Biochemistry. 2018 May 1;57(17):2470-2477. doi: 10.1021/acs.biochem.8b00001. Epub 2018 Apr 3.
2
Functional Implications of Intracellular Phase Transitions.细胞内相变的功能意义
Biochemistry. 2018 May 1;57(17):2415-2423. doi: 10.1021/acs.biochem.7b01136. Epub 2018 Jan 24.
3
Membraneless nuclear organelles and the search for phases within phases.无膜核细胞器和相内相的寻找。
Wiley Interdiscip Rev RNA. 2019 Mar;10(2):e1514. doi: 10.1002/wrna.1514. Epub 2018 Oct 25.
4
A guide to regulation of the formation of biomolecular condensates.生物分子凝聚物形成的调控指南。
FEBS J. 2020 May;287(10):1924-1935. doi: 10.1111/febs.15254. Epub 2020 Mar 14.
5
Physical Chemistry of Cellular Liquid-Phase Separation.细胞液相分离的物理化学
Chemistry. 2019 Apr 17;25(22):5600-5610. doi: 10.1002/chem.201805093. Epub 2019 Feb 7.
6
Biomolecular condensates in cell biology and virology: Phase-separated membraneless organelles (MLOs).细胞生物学和病毒学中的生物分子凝聚物:相分离的无膜细胞器 (MLOs)。
Anal Biochem. 2020 May 15;597:113691. doi: 10.1016/j.ab.2020.113691. Epub 2020 Mar 16.
7
Optogenetic Reconstitution for Determining the Form and Function of Membraneless Organelles.用于确定无膜细胞器的形态和功能的光遗传学重建
Biochemistry. 2018 May 1;57(17):2432-2436. doi: 10.1021/acs.biochem.7b01173. Epub 2018 Jan 26.
8
[Membraneless organelles and liquid-liquid phase separation – methods for their characterisation].[无膜细胞器与液-液相分离——其表征方法]
Postepy Biochem. 2020 Jun 27;66(2):111-124. doi: 10.18388/pb.2020_330.
9
MLOsMetaDB, a meta-database to centralize the information on liquid-liquid phase separation proteins and membraneless organelles.MLOsMetaDB,一个用于集中液-液相分离蛋白和无膜细胞器信息的元数据库。
Protein Sci. 2024 Jan;33(1):e4858. doi: 10.1002/pro.4858.
10
RNAs, Phase Separation, and Membrane-Less Organelles: Are Post-Transcriptional Modifications Modulating Organelle Dynamics?RNAs、液-液相分离和无膜细胞器:转录后修饰是否调节细胞器动力学?
Bioessays. 2018 Dec;40(12):e1800085. doi: 10.1002/bies.201800085. Epub 2018 Oct 29.

引用本文的文献

1
Emerging roles of transcriptional condensates as temporal signal integrators.转录凝聚物作为时间信号整合器的新作用。
Nat Rev Genet. 2025 Apr 16. doi: 10.1038/s41576-025-00837-y.
2
Molecular determinants of condensate composition.凝聚物组成的分子决定因素。
Mol Cell. 2025 Jan 16;85(2):290-308. doi: 10.1016/j.molcel.2024.12.021.
3
The RNA-dependent association of phosphatidylinositol 4,5-bisphosphate with intrinsically disordered proteins contribute to nuclear compartmentalization.磷脂酰肌醇4,5-二磷酸与内在无序蛋白的RNA依赖性结合有助于细胞核区室化。
PLoS Genet. 2024 Dec 2;20(12):e1011462. doi: 10.1371/journal.pgen.1011462. eCollection 2024 Dec.
4
PARP1 condensates differentially partition DNA repair proteins and enhance DNA ligation.聚(ADP-核糖)聚合酶1凝聚物以不同方式分配DNA修复蛋白并增强DNA连接。
EMBO Rep. 2024 Dec;25(12):5635-5666. doi: 10.1038/s44319-024-00285-5. Epub 2024 Nov 4.
5
Reentrant DNA shells tune polyphosphate condensate size.回文 DNA 壳可调节多聚磷酸盐凝聚物的大小。
Nat Commun. 2024 Oct 26;15(1):9258. doi: 10.1038/s41467-024-53469-x.
6
An RNA-centric view of transcription and genome organization.以 RNA 为中心的转录和基因组组织视图。
Mol Cell. 2024 Oct 3;84(19):3627-3643. doi: 10.1016/j.molcel.2024.08.021.
7
Cellular Prion Protein Conformational Shift after Liquid-Liquid Phase Separation Regulated by a Polymeric Antagonist and Mutations.液液相分离调控的细胞朊病毒蛋白构象转变及其多聚物拮抗剂和突变体的作用
J Am Chem Soc. 2024 Oct 9;146(40):27903-27914. doi: 10.1021/jacs.4c10590. Epub 2024 Sep 26.
8
Adenosine Triphosphate: The Primordial Molecule That Controls Protein Homeostasis and Shapes the Genome-Proteome Interface.三磷酸腺苷:控制蛋白质稳态并塑造基因组 - 蛋白质组界面的原始分子。
Biomolecules. 2024 Apr 19;14(4):500. doi: 10.3390/biom14040500.
9
Buffer choice and pH strongly influence phase separation of SARS-CoV-2 nucleocapsid with RNA.缓冲液的选择和 pH 值强烈影响 SARS-CoV-2 核衣壳与 RNA 的相分离。
Mol Biol Cell. 2024 May 1;35(5):ar73. doi: 10.1091/mbc.E23-12-0500. Epub 2024 Apr 3.
10
PARP1 condensates differentially partition DNA repair proteins and enhance DNA ligation.聚(ADP-核糖)聚合酶1凝聚物以不同方式分配DNA修复蛋白并增强DNA连接。
bioRxiv. 2024 Jan 22:2024.01.20.575817. doi: 10.1101/2024.01.20.575817.

本文引用的文献

1
Intrinsically Disordered Regions Can Contribute Promiscuous Interactions to RNP Granule Assembly.无规卷曲区域可以为 RNP 颗粒组装贡献杂乱无章的相互作用。
Cell Rep. 2018 Feb 6;22(6):1401-1412. doi: 10.1016/j.celrep.2018.01.036.
2
Non-invasive perturbations of intracellular flow reveal physical principles of cell organization.非侵入性的细胞内流扰动揭示了细胞组织的物理原理。
Nat Cell Biol. 2018 Mar;20(3):344-351. doi: 10.1038/s41556-017-0032-9. Epub 2018 Feb 5.
3
High-Density Proximity Mapping Reveals the Subcellular Organization of mRNA-Associated Granules and Bodies.高密度接近映射揭示了 mRNA 相关颗粒和体的亚细胞组织。
Mol Cell. 2018 Feb 1;69(3):517-532.e11. doi: 10.1016/j.molcel.2017.12.020. Epub 2018 Jan 25.
4
Context-Dependent and Disease-Specific Diversity in Protein Interactions within Stress Granules.应激颗粒内蛋白相互作用的上下文相关和疾病特异性多样性。
Cell. 2018 Jan 25;172(3):590-604.e13. doi: 10.1016/j.cell.2017.12.032.
5
Phosphorylation, oligomerization and self-assembly in water under potential prebiotic conditions.在潜在的原始生命条件下于水中的磷酸化、寡聚化和自组装。
Nat Chem. 2018 Feb;10(2):212-217. doi: 10.1038/nchem.2878. Epub 2017 Nov 6.
6
Playing with the Molecules of Life.玩转生命分子。
ACS Chem Biol. 2018 Apr 20;13(4):854-870. doi: 10.1021/acschembio.7b00974. Epub 2018 Mar 2.
7
Functional Implications of Intracellular Phase Transitions.细胞内相变的功能意义
Biochemistry. 2018 May 1;57(17):2415-2423. doi: 10.1021/acs.biochem.7b01136. Epub 2018 Jan 24.
8
Phase separation of a yeast prion protein promotes cellular fitness.酵母朊病毒蛋白的液-液相分离促进细胞适应度。
Science. 2018 Jan 5;359(6371). doi: 10.1126/science.aao5654.
9
Photo-Crosslinkable Unnatural Amino Acids Enable Facile Synthesis of Thermoresponsive Nano- to Microgels of Intrinsically Disordered Polypeptides.光交联非天然氨基酸可方便地合成热响应性纳米至微凝胶的无规多肽。
Adv Mater. 2018 Feb;30(5). doi: 10.1002/adma.201704878. Epub 2017 Dec 11.
10
Tailoring the appearance: what will synthetic cells look like?定制外观:合成细胞会是什么样子?
Curr Opin Biotechnol. 2018 Jun;51:47-56. doi: 10.1016/j.copbio.2017.11.005. Epub 2017 Nov 26.

无膜细胞器中的折返相变与非平衡动力学

Reentrant Phase Transitions and Non-Equilibrium Dynamics in Membraneless Organelles.

作者信息

Milin Anthony N, Deniz Ashok A

机构信息

Department of Integrative Structural and Computational Biology , The Scripps Research Institute , La Jolla , California 92037 , United States.

出版信息

Biochemistry. 2018 May 1;57(17):2470-2477. doi: 10.1021/acs.biochem.8b00001. Epub 2018 Apr 3.

DOI:10.1021/acs.biochem.8b00001
PMID:29569441
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5976450/
Abstract

Compartmentalization of biochemical components, interactions, and reactions is critical for the function of cells. While intracellular partitioning of molecules via membranes has been extensively studied, there has been an expanding focus in recent years on the critical cellular roles and biophysical mechanisms of action of membraneless organelles (MLOs) such as the nucleolus. In this context, a substantial body of recent work has demonstrated that liquid-liquid phase separation plays a key role in MLO formation. However, less is known about MLO dissociation, with phosphorylation being the primary mechanism demonstrated thus far. In this Perspective, we focus on another mechanism for MLO dissociation that has been described in recent work, namely a reentrant phase transition (RPT). This concept, which emerges from the polymer physics field, provides a mechanistic basis for both formation and dissolution of MLOs by monotonic tuning of RNA concentration, which is an outcome of cellular processes such as transcription. Furthermore, the RPT model also predicts the formation of dynamic substructures (vacuoles) of the kind that have been observed in cellular MLOs. We end with a discussion of future directions in terms of open questions and methods that can be used to answer them, including further exploration of RPTs in vitro, in cells, and in vivo using ensemble and single-molecule methods as well as theory and computation. We anticipate that continued studies will further illuminate the important roles of reentrant phase transitions and associated non-equilibrium dynamics in the spatial patterning of the biochemistry and biology of the cell.

摘要

生物化学成分、相互作用及反应的区室化对于细胞功能至关重要。虽然通过膜对分子进行细胞内分隔已得到广泛研究,但近年来,诸如核仁等无膜细胞器(MLO)的关键细胞作用及生物物理作用机制受到了越来越多的关注。在这种背景下,近期大量工作表明液-液相分离在MLO形成中起关键作用。然而,对于MLO解离了解较少,到目前为止磷酸化是已证实的主要机制。在本观点文章中,我们关注近期工作中描述的MLO解离的另一种机制,即折返相变(RPT)。这一概念源自聚合物物理领域,通过对RNA浓度进行单调调节为MLO的形成和解离提供了一个机制基础,RNA浓度是转录等细胞过程的结果。此外,RPT模型还预测了在细胞MLO中观察到的那种动态亚结构(液泡)的形成。我们最后讨论了未来的方向,包括有待解决的问题以及可用于解答这些问题的方法,其中包括使用系综和单分子方法以及理论和计算在体外、细胞内和体内进一步探索RPT。我们预计持续的研究将进一步阐明折返相变及相关非平衡动力学在细胞生物化学和生物学空间模式形成中的重要作用。