Milin Anthony N, Deniz Ashok A
Department of Integrative Structural and Computational Biology , The Scripps Research Institute , La Jolla , California 92037 , United States.
Biochemistry. 2018 May 1;57(17):2470-2477. doi: 10.1021/acs.biochem.8b00001. Epub 2018 Apr 3.
Compartmentalization of biochemical components, interactions, and reactions is critical for the function of cells. While intracellular partitioning of molecules via membranes has been extensively studied, there has been an expanding focus in recent years on the critical cellular roles and biophysical mechanisms of action of membraneless organelles (MLOs) such as the nucleolus. In this context, a substantial body of recent work has demonstrated that liquid-liquid phase separation plays a key role in MLO formation. However, less is known about MLO dissociation, with phosphorylation being the primary mechanism demonstrated thus far. In this Perspective, we focus on another mechanism for MLO dissociation that has been described in recent work, namely a reentrant phase transition (RPT). This concept, which emerges from the polymer physics field, provides a mechanistic basis for both formation and dissolution of MLOs by monotonic tuning of RNA concentration, which is an outcome of cellular processes such as transcription. Furthermore, the RPT model also predicts the formation of dynamic substructures (vacuoles) of the kind that have been observed in cellular MLOs. We end with a discussion of future directions in terms of open questions and methods that can be used to answer them, including further exploration of RPTs in vitro, in cells, and in vivo using ensemble and single-molecule methods as well as theory and computation. We anticipate that continued studies will further illuminate the important roles of reentrant phase transitions and associated non-equilibrium dynamics in the spatial patterning of the biochemistry and biology of the cell.
生物化学成分、相互作用及反应的区室化对于细胞功能至关重要。虽然通过膜对分子进行细胞内分隔已得到广泛研究,但近年来,诸如核仁等无膜细胞器(MLO)的关键细胞作用及生物物理作用机制受到了越来越多的关注。在这种背景下,近期大量工作表明液-液相分离在MLO形成中起关键作用。然而,对于MLO解离了解较少,到目前为止磷酸化是已证实的主要机制。在本观点文章中,我们关注近期工作中描述的MLO解离的另一种机制,即折返相变(RPT)。这一概念源自聚合物物理领域,通过对RNA浓度进行单调调节为MLO的形成和解离提供了一个机制基础,RNA浓度是转录等细胞过程的结果。此外,RPT模型还预测了在细胞MLO中观察到的那种动态亚结构(液泡)的形成。我们最后讨论了未来的方向,包括有待解决的问题以及可用于解答这些问题的方法,其中包括使用系综和单分子方法以及理论和计算在体外、细胞内和体内进一步探索RPT。我们预计持续的研究将进一步阐明折返相变及相关非平衡动力学在细胞生物化学和生物学空间模式形成中的重要作用。