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随着技术和生物信息学研究不断发展,液体活检的未来:单细胞水平分析在发现肿瘤异质性方面的机遇与挑战。

Future of Liquid Biopsies With Growing Technological and Bioinformatics Studies: Opportunities and Challenges in Discovering Tumor Heterogeneity With Single-Cell Level Analysis.

作者信息

Ramalingam Naveen, Jeffrey Stefanie S

出版信息

Cancer J. 2018 Mar/Apr;24(2):104-108. doi: 10.1097/PPO.0000000000000308.

DOI:10.1097/PPO.0000000000000308
PMID:29601337
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5880298/
Abstract

Liquid biopsy provides minimally invasive and readily obtainable access to tumor-associated biological material in blood or other body fluids. These samples provide important insights into cancer biology, such as primary tumor heterogeneity; real-time tumor evolution; response to therapy, including immunotherapy; and mechanisms of cancer metastasis. Initial biological materials studied were circulating tumor cells and circulating nucleic acids, including circulating tumor DNA and microRNAs; more recently, studies have expanded to investigate extracellular vesicles, such as exosomes, microvesicles, and large oncosomes; tumor-derived circulating endothelial cells; and tumor-educated platelets. Even with an ongoing ambitious investment effort to develop liquid biopsy as an early cancer detection test in asymptomatic individuals, current challenges remain regarding how to access and analyze rare cells and tumor-derived nucleic acids in cancer patients. Technologies and associated bioinformatics tools are continuously evolving to capture these rare materials in an unbiased manner and to analyze them with high confidence. After first presenting recent applications of liquid biopsy, this review discusses aspects affecting the field, including tumor heterogeneity, single-cell analyses, and associated computational tools that will shape the future of liquid biopsy, with resultant opportunities and challenges.

摘要

液体活检提供了一种微创且易于获取血液或其他体液中肿瘤相关生物材料的方法。这些样本为癌症生物学提供了重要见解,例如原发性肿瘤的异质性、实时肿瘤演变、对治疗(包括免疫治疗)的反应以及癌症转移机制。最初研究的生物材料是循环肿瘤细胞和循环核酸,包括循环肿瘤DNA和微小RNA;最近,研究范围已扩大到研究细胞外囊泡,如外泌体、微囊泡和大肿瘤囊泡;肿瘤来源的循环内皮细胞;以及肿瘤诱导的血小板。尽管目前正在进行雄心勃勃的投资努力,将液体活检开发为无症状个体的早期癌症检测测试,但在如何获取和分析癌症患者中罕见细胞和肿瘤来源核酸方面,目前仍然存在挑战。技术和相关的生物信息学工具正在不断发展,以无偏差的方式捕获这些稀有材料,并进行高可信度的分析。在首先介绍液体活检的近期应用之后,本综述讨论了影响该领域的各个方面,包括肿瘤异质性、单细胞分析以及将塑造液体活检未来的相关计算工具,以及由此带来的机遇和挑战。

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本文引用的文献

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Workflow optimization of whole genome amplification and targeted panel sequencing for CTC mutation detection.用于循环肿瘤细胞(CTC)突变检测的全基因组扩增和靶向测序面板的工作流程优化
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T cell receptor sequencing of early-stage breast cancer tumors identifies altered clonal structure of the T cell repertoire.早期乳腺癌肿瘤的 T 细胞受体测序鉴定出 T 细胞库的克隆结构发生改变。
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High-Throughput Microfluidic Labyrinth for the Label-free Isolation of Circulating Tumor Cells.高通量微流控迷宫用于无标记循环肿瘤细胞的分离。
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