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细菌 G+C 含量、基因组大小与相关质粒和噬菌体 G+C 含量的相关性。

Correlation between bacterial G+C content, genome size and the G+C content of associated plasmids and bacteriophages.

机构信息

1​Aberystwyth University, Aberystwyth, UK.

2​Newcastle University, Newcastle-upon-Tyne, UK.

出版信息

Microb Genom. 2018 Apr;4(4). doi: 10.1099/mgen.0.000168. Epub 2018 Apr 10.

Abstract

Based on complete bacterial genome sequence data, we demonstrate a correlation between bacterial chromosome length and the G+C content of the genome, with longer genomes having higher G+C contents. The correlation value decreases at shorter genome sizes, where there is a wider spread of G+C values. However, although significant (P<0.001), the correlation value (Pearson R=0.58) suggests that other factors also have a significant influence. A similar pattern was seen for plasmids; longer plasmids had higher G+C values, although the large number of shorter plasmids had a wide spread of G+C values. There was also a significant (P<0.0001) correlation between the G+C content of plasmids and the G+C content of their bacterial host. Conversely, the G+C content of bacteriophages tended to reduce with larger genome sizes, and although there was a correlation between host genome G+C content and that of the bacteriophage, it was not as strong as that seen between plasmids and their hosts.

摘要

基于完整的细菌基因组序列数据,我们证明了细菌染色体长度与基因组的 G+C 含量之间存在相关性,即染色体越长,G+C 含量越高。在较短的基因组大小下,相关性值降低,G+C 值的分布范围更广。然而,尽管这种相关性具有统计学意义(P<0.001),但其相关值(皮尔逊 R=0.58)表明,其他因素也有重要影响。这种模式在质粒中也存在;较长的质粒具有较高的 G+C 值,尽管大量较短的质粒具有广泛的 G+C 值分布。质粒的 G+C 含量与它们的细菌宿主的 G+C 含量之间也存在显著的相关性(P<0.0001)。相反,噬菌体的 G+C 含量往往随着基因组大小的增加而降低,尽管噬菌体宿主基因组的 G+C 含量与其之间存在相关性,但不如质粒与其宿主之间的相关性强。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7bb6/5989581/f975380b6a17/mgen-4-168-f001.jpg

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