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一张关于640条细菌染色体的G + C含量与序列长度的关系图显示,这些点广泛散布在上三角区域。

A plot of G + C content against sequence length of 640 bacterial chromosomes shows the points are widely scattered in the upper triangular area.

作者信息

Guo Feng-Biao, Lin Hao, Huang Jian

机构信息

School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu, 610054, China.

出版信息

Chromosome Res. 2009;17(3):359-64. doi: 10.1007/s10577-009-9024-3. Epub 2009 Mar 13.

Abstract

In this work, we study the distribution of G + C content against chromosome size among 640 fully sequenced bacterial chromosomes. When %G + C is plotted versus increasing chromosome length, it is shown that the points denoting 640 bacterial chromosomes are widely scattered in the upper triangular area and the triangle is right-angled. The mean G + C content increases while the range or variance of G + C contents decreases with length. The net effect of these two trends is to exclude data from a triangular area that should represent long A + T-rich chromosomes. Thus, the shorter chromosomes have a wide, 20-70%, range of G + C contents while the longest chromosomes are severely restricted to a G + C content near 70%. To generate the distribution type of right-angled triangle, two conditions are requisite. Consequently, two possible related explanations are presented to interpret the relationship. One aims to give the reason why most large bacterial chromosomes have high G + C contents and the other tries to interpret why most A + T-rich bacterial chromosomes tend to be small in size. Both of the two interpretations are proposed from the selectionist viewpoint and the latter is an addition to the former one. According to the theories, the bacteria with large chromosomes and bacteria with A + T-rich chromosomes have different tactics to cope with ultraviolet radiation and other physical or chemical damage.

摘要

在这项工作中,我们研究了640条全测序细菌染色体中G + C含量相对于染色体大小的分布情况。当将%G + C与不断增加的染色体长度作图时,可以看出,表示640条细菌染色体的点广泛散布在上三角区域,且该三角形为直角三角形。随着长度增加,G + C含量的平均值上升,而G + C含量的范围或方差下降。这两种趋势的净效应是排除了来自一个三角区域的数据,该区域本应代表富含A + T的长染色体。因此,较短的染色体具有20%至70%的较宽G + C含量范围,而最长的染色体则被严格限制在接近70%的G + C含量。要生成直角三角形的分布类型,需要两个条件。因此,提出了两种可能相关的解释来阐释这种关系。一种旨在说明大多数大型细菌染色体具有高G + C含量的原因,另一种则试图解释为什么大多数富含A + T的细菌染色体往往尺寸较小。这两种解释均从选择主义观点出发,且后者是对前者的补充。根据这些理论,具有大型染色体的细菌和富含A + T染色体的细菌应对紫外线辐射及其他物理或化学损伤有不同策略。

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