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微管蛋白二聚体的构象灵活性调节微管动态不稳定性的转变。

Conformational flexibility of tubulin dimers regulates the transitions of microtubule dynamic instability.

作者信息

Shred Maddy, Vangos Nicholas E, Bayne Andrew N, Tetlalmatzi Sofía Cruz, Peng Wang, Trempe Jean-François, Sept David, Cianfrocco Michael A, Brouhard Gary J

出版信息

bioRxiv. 2025 Jul 2:2025.06.30.662375. doi: 10.1101/2025.06.30.662375.

Abstract

Microtubules are highly conserved polymers of αβ-tubulin dimers that undergo dynamic instability. While dynamic instability is conserved across eukaryotes, many of its associated conformational changes, like lattice compaction and twist, are not. Tubulin dimers sample multiple conformations in solution and undergo conformational changes during polymerization; the rate and extent of these changes describes their "conformational flexibility." Here, we investigate the relationship between the conformational flexibility of tubulins and the dynamic phenotypes of the microtubules they produce with a comparative study of tubulin (Dm-Tb) and brain tubulin (Bt-Tb). While these tubulins share high sequence and structural similarity, their microtubules display divergent dynamic phenotypes , with altered transition frequencies between phases of growth and shrinkage. Dm-Tb microtubules showed drastically longer lifetimes, lower barriers to nucleation, and a high rescue frequency, while maintaining a similar growth rate to Bt-Tb microtubules. 3D reconstruction of mature Dm-Tb microtubules showed high structural conservation with mammalian microtubules. However, when we performed molecular dynamics simulations of free tubulin dimers, we found Dm-Tb to be more rigid and adopt fewer conformational states than Bt-Tb. Biochemical characterizations experimentally confirmed this finding, leading us to hypothesize that differences in the conformational flexibility of tubulins may tune the frequency of transitions between the dynamic phases of microtubules, thereby altering their stability and overall dynamic phenotypes.

摘要

微管是由αβ-微管蛋白二聚体组成的高度保守的聚合物,具有动态不稳定性。虽然动态不稳定性在真核生物中是保守的,但其许多相关的构象变化,如晶格压缩和扭曲,并非如此。微管蛋白二聚体在溶液中呈现多种构象,并在聚合过程中发生构象变化;这些变化的速率和程度描述了它们的“构象灵活性”。在这里,我们通过对果蝇微管蛋白(Dm-Tb)和脑微管蛋白(Bt-Tb)的比较研究,探讨了微管蛋白的构象灵活性与其所产生的微管动态表型之间的关系。虽然这些微管蛋白在序列和结构上具有高度相似性,但它们的微管显示出不同的动态表型,生长和收缩阶段之间的转变频率发生了改变。Dm-Tb微管的寿命明显更长,成核障碍更低,拯救频率更高,同时保持与Bt-Tb微管相似的生长速率。成熟Dm-Tb微管的三维重建显示与哺乳动物微管具有高度的结构保守性。然而,当我们对游离微管蛋白二聚体进行分子动力学模拟时,我们发现Dm-Tb比Bt-Tb更刚性,采用的构象状态更少。生化特性实验证实了这一发现,使我们推测微管蛋白构象灵活性的差异可能会调节微管动态阶段之间转变的频率,从而改变其稳定性和整体动态表型。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2e2c/12236738/ba011f575f33/nihpp-2025.06.30.662375v1-f0001.jpg

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