Faculty of Medicine and Life Sciences and BioMediTech, University of Tampere, Finland and Fimlab Laboratories, Tampere, Finland.
Cellular and Molecular Biomechanics Laboratory, Department of Bioengineering, Imperial College London, London, United Kingdom.
PLoS Comput Biol. 2018 Apr 26;14(4):e1006126. doi: 10.1371/journal.pcbi.1006126. eCollection 2018 Apr.
Mechanical stability is a key feature in the regulation of structural scaffolding proteins and their functions. Despite the abundance of α-helical structures among the human proteome and their undisputed importance in health and disease, the fundamental principles of their behavior under mechanical load are poorly understood. Talin and α-catenin are two key molecules in focal adhesions and adherens junctions, respectively. In this study, we used a combination of atomistic steered molecular dynamics (SMD) simulations, polyprotein engineering, and single-molecule atomic force microscopy (smAFM) to investigate unfolding of these proteins. SMD simulations revealed that talin rod α-helix bundles as well as α-catenin α-helix domains unfold through stable 3-helix intermediates. While the 5-helix bundles were found to be mechanically stable, a second stable conformation corresponding to the 3-helix state was revealed. Mechanically weaker 4-helix bundles easily unfolded into a stable 3-helix conformation. The results of smAFM experiments were in agreement with the findings of the computational simulations. The disulfide clamp mutants, designed to protect the stable state, support the 3-helix intermediate model in both experimental and computational setups. As a result, multiple discrete unfolding intermediate states in the talin and α-catenin unfolding pathway were discovered. Better understanding of the mechanical unfolding mechanism of α-helix proteins is a key step towards comprehensive models describing the mechanoregulation of proteins.
机械稳定性是调节结构支架蛋白及其功能的关键特征。尽管人类蛋白质组中α-螺旋结构丰富,并且它们在健康和疾病中具有不可否认的重要性,但它们在机械负载下的行为的基本原理仍知之甚少。桩蛋白和α-连环蛋白分别是黏着斑和黏着连接中的两个关键分子。在这项研究中,我们使用了原子定向分子动力学(SMD)模拟、多蛋白工程和单分子原子力显微镜(smAFM)的组合来研究这些蛋白质的展开。SMD 模拟表明,桩蛋白杆α-螺旋束以及α-连环蛋白α-螺旋结构域通过稳定的 3-螺旋中间体展开。虽然 5-螺旋束被发现具有机械稳定性,但揭示了与之对应的稳定的 3-螺旋状态的第二个稳定构象。机械强度较弱的 4-螺旋束容易展开成稳定的 3-螺旋构象。smAFM 实验的结果与计算模拟的结果一致。设计用于保护稳定状态的二硫键夹突变体在实验和计算设置中均支持 3-螺旋中间体模型。因此,在桩蛋白和α-连环蛋白展开途径中发现了多个离散的展开中间状态。更好地理解α-螺旋蛋白的机械展开机制是全面描述蛋白质机械调节的模型的关键步骤。