Pramanik Krishnendu, Kundu Shreyasi, Banerjee Sandipan, Ghosh Pallab Kumar, Maiti Tushar Kanti
Microbiology Laboratory, Department of Botany, The University of Burdwan, Purba Bardhaman, West Bengal 713104 India.
3 Biotech. 2018 Jun;8(6):262. doi: 10.1007/s13205-018-1287-y. Epub 2018 May 19.
Myo-inositol hexakisphosphate phosphohydrolases (i.e., phytases) are known to be a very important enzyme responsible for solubilization of insoluble phosphates. In the present study, phytases have characterized by different phylogenetic, structural and functional parameters using some standard bio-computational tools. Results showed that majority of the phytases are acidic in nature as most of the isoelectric points were under 7.0. The aliphatic indices predicted for the selected proteins were below 40 indicating their thermostable nature. The average molecular weight of the proteins was 48 kDa. The lower values of GRAVY of the said proteins implied that they have better interactions with water. Secondary structure prediction revealed that alpha-helical content was highest among the other forms such as sheets, coils, etc. Moreover, the predicted 3D structure of phytases divulged that the proteins consisted of four monomeric polypeptide chains i.e., it was a tetrameric protein. The predicted tertiary model of (A0A0M3HCJ2) was deposited in Protein Model Database (Acc. No.: PM0080561) for further utilization after a thorough quality check from QMEAN and SAVES server. Functional analysis supported their classification as histidine acid phosphatases. Besides, multiple sequence alignment revealed that "DG-DP-LG" was the most highly conserved residues within the phytases. Thus, the present study will be useful in selecting suitable phytase-producing microbe exclusively for using in the animal food industry as a food additive.
肌醇六磷酸磷酸水解酶(即植酸酶)是一种非常重要的酶,负责使不溶性磷酸盐溶解。在本研究中,使用一些标准的生物计算工具,根据不同的系统发育、结构和功能参数对植酸酶进行了表征。结果表明,大多数植酸酶本质上呈酸性,因为大多数的等电点低于7.0。所选蛋白质的脂肪族指数预测值低于40,表明它们具有热稳定的性质。这些蛋白质的平均分子量为48 kDa。上述蛋白质的亲水性氨基酸平均系数(GRAVY)较低,这意味着它们与水的相互作用更好。二级结构预测显示,在诸如片层、卷曲等其他结构形式中,α-螺旋含量最高。此外,植酸酶的预测三维结构表明,这些蛋白质由四条单体多肽链组成,即它是一种四聚体蛋白。在经过QMEAN和SAVES服务器的全面质量检查后,(A0A0M3HCJ2)的预测三级模型被存入蛋白质模型数据库(登录号:PM0080561)以供进一步使用。功能分析支持将它们归类为组氨酸酸性磷酸酶。此外,多序列比对显示,“DG-DP-LG”是植酸酶中最保守的残基。因此,本研究将有助于专门选择合适的产植酸酶微生物用于动物食品工业作为食品添加剂。