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[FeFe]-氢化酶中的末端氢化物物种与活性位点环境在振动上耦合。

Terminal Hydride Species in [FeFe]-Hydrogenases Are Vibrationally Coupled to the Active Site Environment.

机构信息

Department of Chemistry, UC Davis, One Shields Ave, Davis, CA, 95616, USA.

National Renewable Energy Laboratory, 15013 Denver W. Pkwy., Golden, CO, 80401, USA.

出版信息

Angew Chem Int Ed Engl. 2018 Aug 13;57(33):10605-10609. doi: 10.1002/anie.201805144. Epub 2018 Jul 23.

DOI:10.1002/anie.201805144
PMID:29923293
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6812543/
Abstract

A combination of nuclear resonance vibrational spectroscopy (NRVS), FTIR spectroscopy, and DFT calculations was used to observe and characterize Fe-H/D bending modes in CrHydA1 [FeFe]-hydrogenase Cys-to-Ser variant C169S. Mutagenesis of cysteine to serine at position 169 changes the functional group adjacent to the H-cluster from a -SH to -OH, thus altering the proton transfer pathway. The catalytic activity of C169S is significantly reduced compared to that of native CrHydA1, presumably owing to less efficient proton transfer to the H-cluster. This mutation enabled effective capture of a hydride/deuteride intermediate and facilitated direct detection of the Fe-H/D normal modes. We observed a significant shift to higher frequency in an Fe-H bending mode of the C169S variant, as compared to previous findings with reconstituted native and oxadithiolate (ODT)-substituted CrHydA1. On the basis of DFT calculations, we propose that this shift is caused by the stronger interaction of the -OH group of C169S with the bridgehead -NH- moiety of the active site, as compared to that of the -SH group of C169 in the native enzyme.

摘要

采用核共振振动光谱(NRVS)、傅里叶变换红外光谱(FTIR)和密度泛函理论(DFT)计算相结合的方法,观察并表征了 CrHydA1[FeFe]-氢化酶 Cys-to-Ser 变体 C169S 中 Fe-H/D 弯曲模式。在 169 位将半胱氨酸突变为丝氨酸,改变了与 H 簇相邻的官能团从 -SH 变为 -OH,从而改变了质子转移途径。与天然 CrHydA1 相比,C169S 的催化活性显著降低,这可能是由于向 H 簇的质子转移效率降低。这种突变能够有效捕获氢化物/氘化物中间体,并促进对 Fe-H/D 正则模态的直接检测。与先前用重组天然和氧杂二硫代物(ODT)取代的 CrHydA1 的研究结果相比,我们观察到 C169S 变体中 Fe-H 弯曲模式的显著高移。基于 DFT 计算,我们提出这种位移是由于 C169S 的 -OH 基团与活性位点的桥头 -NH- 部分的相互作用强于天然酶中 C169 的 -SH 基团。

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Chem Sci. 2016 Jun 1;7(6):3710-3719. doi: 10.1039/c6sc00213g. Epub 2016 Feb 29.
2
A structural view of synthetic cofactor integration into [FeFe]-hydrogenases.合成辅因子整合到[FeFe]-氢化酶中的结构观点。
Chem Sci. 2016 Feb 1;7(2):959-968. doi: 10.1039/c5sc03397g. Epub 2015 Oct 26.
3
Sterically Stabilized Terminal Hydride of a Diiron Dithiolate.二铁二硫醇盐的空间稳定末端氢化物。
Inorg Chem. 2018 Feb 19;57(4):1988-2001. doi: 10.1021/acs.inorgchem.7b02903. Epub 2018 Jan 31.
4
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J Am Chem Soc. 2017 Nov 22;139(46):16894-16902. doi: 10.1021/jacs.7b09751. Epub 2017 Nov 9.
5
Accumulating the hydride state in the catalytic cycle of [FeFe]-hydrogenases.在[FeFe]-氢化酶的催化循环中积累氢化物态。
Nat Commun. 2017 Jul 19;8:16115. doi: 10.1038/ncomms16115.
6
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8
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9
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10
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Phys Chem Chem Phys. 2015 Feb 21;17(7):5421-30. doi: 10.1039/c4cp05426a.