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利用SNP微阵列鉴定芜菁根肿病抗性的数量性状位点

Identification of Quantitative Trait Loci for Clubroot Resistance in With the Use of SNP Microarray.

作者信息

Peng Lisha, Zhou Lili, Li Qinfei, Wei Dayong, Ren Xuesong, Song Hongyuan, Mei Jiaqin, Si Jun, Qian Wei

机构信息

College of Horticulture and Landscape Architecture, Southwest University, Chongqing, China.

Key Laboratory of Horticulture Science for Southern Mountains Regions, Ministry of Education, Chongqing, China.

出版信息

Front Plant Sci. 2018 Jun 18;9:822. doi: 10.3389/fpls.2018.00822. eCollection 2018.

Abstract

Increasing clubroot resistance (CR) of by ascertaining the molecular mechanisms has been the key focus in modern breeding. In order to identify the quantitative trait loci (QTLs) associated with CR in , 94 F2 vegetative lines which were developed by tissue culture of selfed seeds from the F1 generation between a clubroot-resistant inbred line and a susceptible line, were identified for disease incidence and six CR-associated traits under a lab inoculation by and were genotyped with the 60K SNP array. Significant correlations were detected for numbers of fibrous roots and content in roots with disease incidence. Nine linkage groups were constructed from 565 bins which covered around 3,000 SNPs, spanning 1,028 cM of the genome with an average distance of 1.82 cM between adjacent bins. A total of 23 QTLs were identified for disease incidence and the other two correlated traits, individually explaining 6.1-17.8% of the phenotypic variation. Several overlaps were detected among traits, including one three-traits-overlapped locus on linkage group C08 and two important overlapped regions between the two CR-associated traits on C06. The QTLs were compared with known CR loci/genes and the novelty of our QTLs was discussed.

摘要

通过确定分子机制来提高对根肿病的抗性一直是现代育种的关键重点。为了鉴定与根肿病抗性相关的数量性状基因座(QTL),利用根肿病抗性自交系和感病自交系杂交的F1代自交种子进行组织培养,获得了94个F2无性系,在实验室接种条件下鉴定了这些无性系的发病率和6个与根肿病抗性相关的性状,并使用60K油菜SNP芯片进行基因分型。检测到须根数和根中丙二醛含量与发病率之间存在显著相关性。从覆盖约3000个SNP的565个bin构建了9个连锁群,跨越油菜基因组1028 cM,相邻bin之间的平均距离为1.82 cM。共鉴定出23个与发病率和其他两个相关性状有关的QTL,单个QTL解释的表型变异为6.1%-17.8%。在性状之间检测到几个重叠区域,包括C08连锁群上一个三个性状重叠的位点和C06上两个与根肿病抗性相关性状之间的两个重要重叠区域。将这些QTL与已知的根肿病抗性位点/基因进行了比较,并讨论了我们所鉴定QTL的新颖性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6081/6015909/88b6308a4114/fpls-09-00822-g001.jpg

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