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硝酸盐还原盐杆菌新种,一种从印度桑巴尔盐湖水样中分离出的耐盐碱细菌。

Salibacterium nitratireducens sp. nov., a haloalkalitolerant bacterium isolated from a water sample from Sambhar salt lake, India.

作者信息

Singh Harjodh, Kaur Manpreet, Singh Shweta, Mishra Sunita, Kumar Shekhar, Vemuluri Venkata Ramana, Tanuku Naga Radha Srinivas, Pinnaka Anil Kumar

机构信息

1​Academy of Scientific and Innovative Research, (AcSIR), CSIR Campus, Chennai, India.

2​MTCC-Microbial Type Culture Collection and Gene Bank, CSIR-Institute of Microbial Technology, Chandigarh-160036, India.

出版信息

Int J Syst Evol Microbiol. 2018 Nov;68(11):3506-3511. doi: 10.1099/ijsem.0.003021. Epub 2018 Sep 18.

Abstract

A strictly aerobic, haloalkali-tolerant, Gram-stain-positive, non-motile, rod-shaped bacterium, designated strain SMB4, was isolated from a water sample collected from Sambhar salt lake, Rajasthan, India. Growth occurred at 25-50 °C, 4-12 % (w/v) NaCl and pH of 5-9. Strain SMB4 was positive for β-galactosidase, oxidase, catalase and urease activities. The fatty acids were dominated by branched forms of fatty acids with iso- and anteiso-saturated fatty acids, with a high abundance of anteiso-C15 : 0, anteiso-C17 : 0 and C18 : 0. The cell-wall peptidoglycan of strain SMB4 contained meso-diaminopimelic acid, while the polar lipids included diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, one unidentified phospholipid and three unidentified lipids. The DNA G+C content of strain SMB4 was 49.1 mol%. A blast sequence similarity search based on 16S rRNA gene sequence indicated that Salibacterium halochares, Salibacterium halotolerans and Salibacterium qingdaonense were the nearest phylogenetic neighbours, with a pair-wise sequence similarities of 98.4, 98.2 and 97.0 % respectively. Phylogenetic analysis showed that strain SMB4 was clustered with S. halochares and together clustered with S. halotolerans and S. qingdaonense. DNA-DNA hybridization of strain SMB4 with S. halochares DSM 21373, S. halotolerans S7 and S. quigdaonense DSM 21621 showed a relatedness values of only 39.8, 26.3 and 42.8 %, respectively. Based on its phenotypic characteristics and on phylogenetic inference, strain SMB4 represents a novel species of the genus Salibacterium, for which the name Salibacterium nitratireducens sp. nov. is proposed. The type strain is SMB4 (=MTCC 12633=KCTC 33876=JCM 32187).

摘要

从印度拉贾斯坦邦桑伯尔盐湖采集的水样中分离出一株严格需氧、耐盐碱、革兰氏染色阳性、无运动性的杆状细菌,命名为SMB4菌株。该菌株在25-50 °C、4-12%(w/v)NaCl和pH值为5-9的条件下生长。SMB4菌株的β-半乳糖苷酶、氧化酶、过氧化氢酶和脲酶活性呈阳性。脂肪酸以异饱和脂肪酸和anteiso饱和脂肪酸的支链形式为主,anteiso-C15 : 0、anteiso-C17 : 0和C18 : 0含量较高。SMB4菌株的细胞壁肽聚糖含有内消旋二氨基庚二酸,而极性脂质包括双磷脂酰甘油、磷脂酰甘油、磷脂酰乙醇胺、一种未鉴定的磷脂和三种未鉴定的脂质。SMB4菌株的DNA G+C含量为49.1 mol%。基于16S rRNA基因序列的blast序列相似性搜索表明,盐栖盐杆菌、耐盐盐杆菌和青岛盐杆菌是最近的系统发育邻居,两两序列相似性分别为98.4%、98.2%和97.0%。系统发育分析表明,SMB4菌株与盐栖盐杆菌聚类,并与耐盐盐杆菌和青岛盐杆菌一起聚类。SMB4菌株与盐栖盐杆菌DSM 21373、耐盐盐杆菌S7和青岛盐杆菌DSM 21621的DNA-DNA杂交显示,相关性值分别仅为39.8%、26.3%和42.8%。基于其表型特征和系统发育推断,SMB4菌株代表盐杆菌属的一个新物种,为此提出新名称硝酸盐还原盐杆菌(Salibacterium nitratireducens sp. nov.)。模式菌株为SMB4(=MTCC 12633=KCTC 33876=JCM 32187)。

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