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新型17β-雌二醇降解菌SJTR1的鉴定及基因组分析

Identification and genome analysis of SJTR1, a novel 17β-estradiol degradation bacterium.

作者信息

Xiong Weiliang, Peng Wanli, Liang Rubing

机构信息

State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai, 200240 China.

出版信息

3 Biotech. 2018 Oct;8(10):433. doi: 10.1007/s13205-018-1466-x. Epub 2018 Oct 1.

Abstract

Biodegradation with microorganisms is considered as an efficient strategy to remove the environmental pollutants. In this work, SJTR1 isolated from the wastewater was confirmed with great degradation capability to 17β-estradiol, one typical estrogen chemical. It could degrade nearly 90% of 17β-estradiol (10 mg/L) in 5 days and transform it into estrone; its degradation kinetics fitted for the first-order kinetic equation. The whole genome sequence of SJTR1 was obtained and annotated, containing one chromosome (3,315,586 bp) and four plasmids (ranging from 17,267 bp to 460,244 bp). A total of 3913 CDSs and 73 RNA genes (including 12 rRNA genes, 50 tRNA genes, and 11 ncRNA genes) were identified in its whole genome sequence. On this basis, a series of potential genes involved in steroid metabolism and stress responses of SJTR1 were predicted. It is the first report of strain with the degradation capability to estrogens. This work could enrich the genome sources of the estrogen-degrading strains and promote the degradation mechanism study of 17β-estradiol in bacteria.

摘要

利用微生物进行生物降解被认为是去除环境污染物的一种有效策略。在本研究中,从废水中分离出的SJTR1被证实对一种典型的雌激素化学物质17β-雌二醇具有很强的降解能力。它能在5天内降解近90%的17β-雌二醇(10mg/L),并将其转化为雌酮;其降解动力学符合一级动力学方程。获得并注释了SJTR1的全基因组序列,它包含一条染色体(3315586bp)和四个质粒(大小从17267bp到460244bp不等)。在其全基因组序列中总共鉴定出3913个编码序列和73个RNA基因(包括12个rRNA基因、50个tRNA基因和11个非编码RNA基因)。在此基础上,预测了一系列参与SJTR1类固醇代谢和应激反应的潜在基因。这是关于具有雌激素降解能力菌株的首次报道。本研究可以丰富雌激素降解菌株的基因组资源,并促进细菌中17β-雌二醇降解机制的研究。

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