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基于 HR-μMAS NMR 的代谢组学:用 μg 组织对大蒜瓣进行本地化代谢分析。

HR-μMAS NMR-Based Metabolomics: Localized Metabolic Profiling of a Garlic Clove with μg Tissues.

机构信息

NIMBE, CEA, CNRS , Université Paris-Saclay, CEA Saclay , 91191 Gif-sur-Yvette , France.

JEOL RESONANCE Inc. , Musashino, Akishima , Tokyo 196-8558 , Japan.

出版信息

Anal Chem. 2018 Nov 20;90(22):13736-13743. doi: 10.1021/acs.analchem.8b04150. Epub 2018 Nov 1.

DOI:10.1021/acs.analchem.8b04150
PMID:30346145
Abstract

The localization of metabolic profiles within a tissue sample is of particular interest when the sampling size is considerably small, i.e., in the order of a microgram (μg) scale. Small sampling size is inevitable when the sample availability is limited, or when different metabolic profiles are suspected in small disparate sample regions. Capitalizing a recently introduced high-resolution micro-MAS probe (HR-μMAS) for its capability of high-quality NMR data acquisition of μg samples, this study explores the localized metabolic NMR profiling of a single garlic clove and compares the methodology and results with the standard HR-MAS. One advantage of HR-μMAS is the feasibility of analyzing homogeneous μg samples within a large heterogeneous tissue. As a result, the sampling mass (<0.5 mg) allows to selectively profile four homogeneous anatomical garlic regions by HR-μMAS (skin, flesh, inner epidermis, and sprout), in contrast to three regions (skin, flesh, and core ≡ inner epidermis and sprout) by HR-MAS, with a sampling mass of ca. 8 mg. Discriminant analysis was carried out to identify the significant variables in the different regions. It found a significant presence of fructose in both skin and flesh, while sucrose and glucose are predominant in the core. Among the garlic characteristic sulfur compounds, allicin is dominant in the core and allyl mercaptan in both skin and flesh. Quantification analysis was conducted and demonstrated its potential by quantifying metabolites at the μg-level. This study offers an important basis for designing HR-μMAS NMR-based metabolomics studies that can benefit from profiling μg-scale samples.

摘要

当采样量非常小,即微克(μg)级时,组织样本中代谢谱的定位就变得尤为重要。当样本可用性有限,或者怀疑小而不同的样本区域存在不同的代谢谱时,就不可避免地需要小采样量。本研究利用最近引入的高分辨率微区探头(HR-μMAS),因其能够对μg 级样品进行高质量 NMR 数据采集的能力,探索了单个大蒜瓣的局部代谢 NMR 图谱,并将该方法与标准 HR-MAS 进行了比较。HR-μMAS 的一个优势是能够分析大异质组织内同质的μg 级样品。因此,与 HR-MAS 所需的约 8mg 采样量相比,HR-μMAS 仅需 <0.5mg 的采样量即可选择性地对四个同质的大蒜解剖区域(表皮、果肉、内表皮和芽)进行 HR-μMAS 分析,而 HR-MAS 只能分析三个区域(表皮、果肉和核心 ≡ 内表皮和芽)。判别分析用于识别不同区域中显著的变量。结果发现,表皮和果肉中均存在显著的果糖,而核心中则以蔗糖和葡萄糖为主。在大蒜特征性硫化合物中,蒜素在核心中占主导地位,丙烯基硫醇在表皮和果肉中均占主导地位。定量分析表明,该方法具有在μg 水平定量代谢物的潜力。本研究为设计基于 HR-μMAS NMR 的代谢组学研究提供了重要依据,这些研究可以受益于对μg 级样品的分析。

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