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哺乳动物高通量筛选试验结果的跨物种外推证据。

Evidence for Cross Species Extrapolation of Mammalian-Based High-Throughput Screening Assay Results.

机构信息

Office of Research and Development, National Health and Environmental Effects Research Laboratory, Mid-Continent Ecology Division , US Environmental Protection Agency , 6201 Congdon Blvd. , Duluth , Minnesota 55804 , United States.

National Research Council , 6201 Congdon Blvd. , Duluth , Minnesota 55804 , United States.

出版信息

Environ Sci Technol. 2018 Dec 4;52(23):13960-13971. doi: 10.1021/acs.est.8b04587. Epub 2018 Nov 13.

DOI:10.1021/acs.est.8b04587
PMID:30351027
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8283686/
Abstract

High-throughput screening (HTS) and computational technologies have emerged as important tools for chemical hazard identification. The US Environmental Protection Agency (EPA) launched the Toxicity ForeCaster (ToxCast) Program, which has screened thousands of chemicals in hundreds of mammalian-based HTS assays for biological activity. The data are being used to prioritize toxicity testing on those chemicals likely to lead to adverse effects. To use HTS assays in predicting hazard to both humans and wildlife, it is necessary to understand how broadly these data may be extrapolated across species. The US EPA Sequence Alignment to Predict Across Species Susceptibility (SeqAPASS; https://seqapass.epa.gov/seqapass/ ) tool was used to assess conservation of the 484 protein targets represented in the suite of ToxCast assays and other HTS assays. To demonstrate the utility of the SeqAPASS data for guiding extrapolation, case studies were developed which focused on targets of interest to the US Endocrine Disruptor Screening Program and the Organisation for Economic Cooperation and Development. These case studies provide a line of evidence for conservation of endocrine targets across vertebrate species, with few exceptions, and demonstrate the utility of SeqAPASS for defining the taxonomic domain of applicability for HTS results and identifying organisms for suitable follow-up toxicity tests.

摘要

高通量筛选 (HTS) 和计算技术已成为识别化学危害的重要工具。美国环境保护署 (EPA) 启动了毒性预测器 (ToxCast) 计划,该计划已对数百种基于哺乳动物的 HTS 测定法中的数千种化学物质进行了生物活性筛选。这些数据用于优先对那些可能导致不良影响的化学物质进行毒性测试。为了在预测对人类和野生动物的危害时使用 HTS 测定法,有必要了解这些数据在多大程度上可以在物种间广泛推断。美国 EPA 序列比对预测跨物种敏感性 (SeqAPASS; https://seqapass.epa.gov/seqapass/ ) 工具用于评估 ToxCast 测定法和其他 HTS 测定法中所代表的 484 种蛋白质靶标的保守性。为了证明 SeqAPASS 数据在指导推断方面的实用性,开发了案例研究,这些研究集中于美国内分泌干扰物筛选计划和经济合作与发展组织感兴趣的靶标。这些案例研究为跨脊椎动物物种的内分泌靶标保守性提供了一条证据,除了少数例外,并展示了 SeqAPASS 用于定义 HTS 结果的适用分类学范围以及识别适合后续毒性测试的生物体的实用性。

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