Institute for Bioinformatics and Systems Biology (IBIS), Helmholtz Zentrum München-German Research Center for Environmental Health (GmbH), Ingolstädter Landstraße 1, D-85764 Neuherberg, Germany.
Nucleic Acids Res. 2019 Jan 8;47(D1):D559-D563. doi: 10.1093/nar/gky973.
CORUM is a database that provides a manually curated repository of experimentally characterized protein complexes from mammalian organisms, mainly human (67%), mouse (15%) and rat (10%). Given the vital functions of these macromolecular machines, their identification and functional characterization is foundational to our understanding of normal and disease biology. The new CORUM 3.0 release encompasses 4274 protein complexes offering the largest and most comprehensive publicly available dataset of mammalian protein complexes. The CORUM dataset is built from 4473 different genes, representing 22% of the protein coding genes in humans. Protein complexes are described by a protein complex name, subunit composition, cellular functions as well as the literature references. Information about stoichiometry of subunits depends on availability of experimental data. Recent developments include a graphical tool displaying known interactions between subunits. This allows the prediction of structural interconnections within protein complexes of unknown structure. In addition, we present a set of 58 protein complexes with alternatively spliced subunits. Those were found to affect cellular functions such as regulation of apoptotic activity, protein complex assembly or define cellular localization. CORUM is freely accessible at http://mips.helmholtz-muenchen.de/corum/.
CORUM 是一个数据库,提供了来自哺乳动物生物体(主要是人类 67%、小鼠 15%和大鼠 10%)的经过实验验证的蛋白质复合物的人工注释库。由于这些大分子机器具有重要的功能,因此对它们的鉴定和功能特征的研究是我们理解正常和疾病生物学的基础。新的 CORUM 3.0 版本包含 4274 个蛋白质复合物,提供了最大和最全面的哺乳动物蛋白质复合物公开数据集。CORUM 数据集由 4473 个不同的基因构建而成,代表人类编码蛋白质基因的 22%。蛋白质复合物由蛋白质复合物名称、亚基组成、细胞功能以及文献参考来描述。亚基的化学计量信息取决于实验数据的可用性。最近的发展包括一个显示亚基之间已知相互作用的图形工具。这允许预测未知结构的蛋白质复合物中的结构连接。此外,我们还介绍了一组 58 个具有可变剪接亚基的蛋白质复合物。这些亚基被发现影响细胞功能,如凋亡活性的调节、蛋白质复合物组装或定义细胞定位。CORUM 可在 http://mips.helmholtz-muenchen.de/corum/ 免费获取。