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利用 TCGA 数据库和生物信息学分析检测胃癌中 DLGAPs 的表达及预后意义。

Examination of the expression and prognostic significance of DLGAPs in gastric cancer using the TCGA database and bioinformatic analysis.

机构信息

Department of Gerontological Surgery, First Affiliated Hospital of Xi'an Jiaotong University, Xi'an, Shaanxi 710061, P.R. China.

Department of Oncological Surgery, First Affiliated Hospital of Xi'an Jiaotong University, Xi'an, Shaanxi 710061, P.R. China.

出版信息

Mol Med Rep. 2018 Dec;18(6):5621-5629. doi: 10.3892/mmr.2018.9574. Epub 2018 Oct 23.

DOI:10.3892/mmr.2018.9574
PMID:30365066
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6236227/
Abstract

The discs large‑associated protein (DLGAP) family has been implicated in psychological and neurological diseases. However, few studies have explored the association between the expression of DLGAPs and different types of cancer. Therefore, the present study analyzed the status of DLGAPs in gastric cancer (GC) using bioinformatic tools. Analyses of data obtained from The Cancer Genome Atlas and Gene Expression Omnibus databases revealed that there was selective upregulation of DLGAP4 and DLGAP5 expression in GC tissues when compared with normal gastric tissues. In addition, survival analysis using OncoLnc indicated that high expression of DLGAP4 was significantly correlated with shorter overall survival for all GC patients. However, Kaplan‑Meier plots demonstrated that the expression of all DLGAPs, except for DLGAP3, was correlated with patient prognosis; DLGAP4 was consistently associated with GC. DLGAP4 mRNA and protein distributions were examined by reverse transcription‑quantitative polymerase chain reaction and immunohistochemsitry. Furthermore, its mutation rate and associated biological processes and signaling pathways were assessed in GC with cBioPortal and FunRich analyses. Taken together, these results indicated that DLGAP4 may serve an oncogenic role in GC development and may be a monitoring target for GC prognosis.

摘要

大蛋白相关蛋白 (DLGAP) 家族与心理和神经疾病有关。然而,很少有研究探讨 DLGAPs 的表达与不同类型癌症之间的关系。因此,本研究使用生物信息学工具分析了胃癌 (GC) 中 DLGAPs 的状态。对来自癌症基因组图谱和基因表达综合数据库的数据进行分析显示,与正常胃组织相比,GC 组织中 DLGAP4 和 DLGAP5 的表达存在选择性上调。此外,OncoLnc 的生存分析表明,DLGAP4 的高表达与所有 GC 患者的总生存率显著相关。然而,Kaplan-Meier 图表明,除了 DLGAP3 之外,所有 DLGAPs 的表达都与患者的预后相关;DLGAP4 与 GC 始终相关。通过逆转录-定量聚合酶链反应和免疫组织化学检查 DLGAP4 的 mRNA 和蛋白分布。此外,还通过 cBioPortal 和 FunRich 分析评估了 GC 中 DLGAP4 的突变率及其相关的生物过程和信号通路。综上所述,这些结果表明 DLGAP4 可能在 GC 发展中发挥致癌作用,可能是 GC 预后的监测靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad55/6236227/5937a9b13d02/MMR-18-06-5621-g07.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad55/6236227/993d1241101a/MMR-18-06-5621-g00.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad55/6236227/42a41bd43fdf/MMR-18-06-5621-g01.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad55/6236227/9773651ebedc/MMR-18-06-5621-g02.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad55/6236227/b229707b2616/MMR-18-06-5621-g03.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad55/6236227/2d26b0881721/MMR-18-06-5621-g04.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad55/6236227/877e972f863f/MMR-18-06-5621-g05.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad55/6236227/a0d083399759/MMR-18-06-5621-g06.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad55/6236227/5937a9b13d02/MMR-18-06-5621-g07.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad55/6236227/993d1241101a/MMR-18-06-5621-g00.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad55/6236227/42a41bd43fdf/MMR-18-06-5621-g01.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad55/6236227/9773651ebedc/MMR-18-06-5621-g02.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad55/6236227/b229707b2616/MMR-18-06-5621-g03.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad55/6236227/2d26b0881721/MMR-18-06-5621-g04.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad55/6236227/877e972f863f/MMR-18-06-5621-g05.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad55/6236227/a0d083399759/MMR-18-06-5621-g06.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad55/6236227/5937a9b13d02/MMR-18-06-5621-g07.jpg

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