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基因组范围调查鞑靼荞麦中的生长素响应因子基因家族 ()。

Genome-Wide Investigation of the Auxin Response Factor Gene Family in Tartary Buckwheat ().

机构信息

College of Life Science, Sichuan Agricultural University, Ya'an 625014, China.

College of Agricultural Science, Xichang University, Xichang 615000, China.

出版信息

Int J Mol Sci. 2018 Nov 9;19(11):3526. doi: 10.3390/ijms19113526.

DOI:10.3390/ijms19113526
PMID:30423920
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6274889/
Abstract

Auxin signaling plays an important role in plant growth and development. It responds to various developmental and environmental events, such as embryogenesis, organogenesis, shoot elongation, tropical growth, lateral root formation, flower and fruit development, tissue and organ architecture, and vascular differentiation. However, there has been little research on the () genes of tartary buckwheat (), an important edible and medicinal crop. The recent publication of the whole-genome sequence of tartary buckwheat enables us to study the tissue and expression profile of the gene on a genome-wide basis. In this study, 20 () genes were identified and renamed according to the chromosomal distribution of the genes. The results showed that the genes belonged to the related sister pair, and the chromosomal map showed that the duplication of was related to the duplication of the chromosome blocks. The duplication of some genes shows conserved intron/exon structure, which is different from other genes, suggesting that the function of these genes may be diverse. Real-time quantitative PCR analysis exhibited distinct expression patterns of genes in various tissues and in response to exogenous auxin during fruit development. In this study, 20 genes were identified, and the structure, evolution, and expression patterns of the proteins were studied. This systematic analysis laid a foundation for the further study of the functional characteristics of the genes and for the improvement of tartary buckwheat crops.

摘要

生长素信号转导在植物生长发育中起着重要作用。它对外界环境刺激和发育事件做出响应,如胚胎发生、器官发生、茎伸长、向热生长、侧根形成、花和果实发育、组织和器官形态建成以及维管分化等。然而,对于重要的食用和药用作物苦荞()来说,其生长素信号转导相关()基因的研究甚少。苦荞全基因组序列的最近公布,使我们能够在全基因组范围内研究基因的组织和表达模式。在本研究中,根据基因在染色体上的分布,鉴定出 20 个()基因并重新命名。结果表明,基因属于同源姊妹对,染色体图谱显示的是与染色体块的重复有关。一些基因的重复显示出保守的内含子/外显子结构,这与其他基因不同,表明这些基因的功能可能多样化。实时定量 PCR 分析显示,基因在不同组织中的表达模式存在明显差异,并对外源生长素在果实发育过程中的响应存在差异。本研究鉴定出 20 个基因,并对其蛋白结构、进化和表达模式进行了研究。这项系统分析为进一步研究基因的功能特性以及苦荞作物的改良奠定了基础。

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Int J Mol Sci. 2018 Sep 13;19(9):2755. doi: 10.3390/ijms19092755.
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Insights into the correlation between Physiological changes in and seed development of tartary buckwheat (Fagopyrum tataricum Gaertn.).揭示鞑靼荞麦(Fagopyrum tataricum Gaertn.)生理变化与种子发育之间的相关性。
BMC Genomics. 2018 Aug 31;19(1):648. doi: 10.1186/s12864-018-5036-8.
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The Tartary Buckwheat Genome Provides Insights into Rutin Biosynthesis and Abiotic Stress Tolerance.
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BMC Plant Biol. 2025 Jan 7;25(1):25. doi: 10.1186/s12870-024-06019-y.
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