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螳螂线粒体基因组数据及螳螂目内的系统发育构建。

Data for praying mantis mitochondrial genomes and phylogenetic constructions within Mantodea.

作者信息

Zhang Le-Ping, Yu Dan-Na, Storey Kenneth B, Cheng Hong-Yi, Zhang Jia-Yong

机构信息

College of Chemistry and Life Science, Zhejiang Normal University, Jinhua 321004, Zhejiang Province, China.

Key Lab of Wildlife Biotechnology, Conservation and Utilization of Zhejiang Province, Zhejiang Normal University, Jinhua, Zhejiang Province, China.

出版信息

Data Brief. 2018 Oct 25;21:1277-1285. doi: 10.1016/j.dib.2018.10.070. eCollection 2018 Dec.

DOI:10.1016/j.dib.2018.10.070
PMID:30456244
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6230978/
Abstract

In this data article, we provide five datasets of mantis mitochondrial genomes: (1) PCG123: nucleotide sequences of 13 protein-coding genes including all codon positions; (2) PCG123R: nucleotide sequences of two rRNAs and 13 protein-coding genes including all codon positions; (3) PCG12: nucleotide sequences of 13 protein-coding genes without third codon positions; (4) PCG12R: nucleotide sequences of two rRNAs and 13 protein-coding genes without third codon positions, and (5) PCGAA: amino acid sequences of 13 protein-coding genes. These were used to construct phylogenetic relationships within Mantodea and the phylogenetic trees inferred from Bayesian analysis using two data sets (PCG12R, PCGAA) and Maximum Likelihood analysis using four data sets (PCG123, PCG12, PCG12R and PCGAA). We also provide initiation codon, termination codon, amino acid length and nucleotide diversity (Pi) of protein-coding genes among 27 mantises. The whole mitochondrial genomes of 27 praying mantises were submitted to GenBank with the accession numbers KY689112-KY689138.

摘要

在本数据文章中,我们提供了五个螳螂线粒体基因组数据集:(1)PCG123:13个蛋白质编码基因的核苷酸序列,包括所有密码子位置;(2)PCG123R:两个rRNA和13个蛋白质编码基因的核苷酸序列,包括所有密码子位置;(3)PCG12:13个蛋白质编码基因的核苷酸序列,不含第三密码子位置;(4)PCG12R:两个rRNA和13个蛋白质编码基因的核苷酸序列,不含第三密码子位置;以及(5)PCGAA:13个蛋白质编码基因的氨基酸序列。这些数据集用于构建螳螂目内部的系统发育关系,以及使用两个数据集(PCG12R、PCGAA)通过贝叶斯分析和使用四个数据集(PCG123、PCG12、PCG12R和PCGAA)通过最大似然分析推断出的系统发育树。我们还提供了27种螳螂中蛋白质编码基因的起始密码子、终止密码子、氨基酸长度和核苷酸多样性(Pi)。27种螳螂的完整线粒体基因组已提交至GenBank,登录号为KY689112 - KY689138。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f0c2/6230978/2fa4dcca947b/gr8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f0c2/6230978/c0c69d8608b3/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f0c2/6230978/1620131817e9/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f0c2/6230978/645b0ae4d2b4/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f0c2/6230978/8d2edc0d30e9/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f0c2/6230978/3c1476fe0d8f/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f0c2/6230978/06164099f822/gr6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f0c2/6230978/d3d07b89ad4c/gr7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f0c2/6230978/2fa4dcca947b/gr8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f0c2/6230978/c0c69d8608b3/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f0c2/6230978/1620131817e9/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f0c2/6230978/645b0ae4d2b4/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f0c2/6230978/8d2edc0d30e9/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f0c2/6230978/3c1476fe0d8f/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f0c2/6230978/06164099f822/gr6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f0c2/6230978/d3d07b89ad4c/gr7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f0c2/6230978/2fa4dcca947b/gr8.jpg

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本文引用的文献

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