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来自假种皮从头转录组组装的数据集。

Dataset from de novo transcriptome assembly of aril.

作者信息

Matra Deden Derajat, Ritonga Arya Widura, Natawijaya Azis, Poerwanto Roedhy, Widodo Winarso Drajad, Inoue Eiichi

机构信息

Department of Agronomy and Horticulture, Bogor Agricultural University, Indonesia.

Research and Development Division, Mekarsari Fruit Garden, Indonesia.

出版信息

Data Brief. 2018 Dec 14;22:566-569. doi: 10.1016/j.dib.2018.12.034. eCollection 2019 Feb.

DOI:10.1016/j.dib.2018.12.034
PMID:30627609
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6321968/
Abstract

(Rambutan), is one of tropical fruit in which - cultivated widely in Indonesia and has good taste and aroma. However, the transcriptomic study of rambutan has limited. In this study, we performed transcriptome assembly using paired-end Illumina technology. The assembled transcriptome was constructed using Trinity and after filtering and removal sequences redundancy produced 36,303 contigs. The contig ranged 201-11,770 bp and N50 has 1327 bp. The contig was annotated with several databases such as SwissProt, TrEMBL, and nr/nt of NCBI databases. The raw reads are deposited in the DDBJ with DRA accession number, DRA007359: https://www.ncbi.nlm.nih.gov/sra/?term=DRA007359. The assembled contigs of transcriptome are deposited in the DDBJ TSA repository with accession number IADQ01000001-IADQ01036303: ftp://ftp.ddbj.nig.ac.jp/ddbj_database/tsa/IADQ.gz and also can be accessed at http://rujakbase.id.

摘要

红毛丹是一种热带水果，在印度尼西亚广泛种植，味道和香气俱佳。然而，红毛丹的转录组学研究有限。在本研究中，我们使用双末端Illumina技术进行转录组组装。组装的转录组使用Trinity构建，经过过滤和去除序列冗余后产生了36,303个重叠群。重叠群长度在201至11,770 bp之间，N50为1327 bp。这些重叠群用多个数据库进行注释，如SwissProt、TrEMBL以及NCBI数据库的nr/nt。原始读数存于DDBJ，DRA登录号为DRA007359：https://www.ncbi.nlm.nih.gov/sra/?term=DRA007359。转录组组装的重叠群存于DDBJ TSA库，登录号为IADQ01000001 - IADQ01036303：ftp://ftp.ddbj.nig.ac.jp/ddbj_database/tsa/IADQ.gz，也可在http://rujakbase.id访问。

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本文引用的文献

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Genom Data. 2016 Sep 9;10:35-7. doi: 10.1016/j.gdata.2016.09.003. eCollection 2016 Dec.
2
Corset: enabling differential gene expression analysis for de novo assembled transcriptomes.Corset：为从头组装的转录组实现差异基因表达分析。
Genome Biol. 2014 Jul 26;15(7):410. doi: 10.1186/s13059-014-0410-6.
3
Full-length transcriptome assembly from RNA-Seq data without a reference genome.无参考基因组的 RNA-Seq 数据的全长转录组组装。
Nat Biotechnol. 2011 May 15;29(7):644-52. doi: 10.1038/nbt.1883.
4
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences.Cd-hit：一个用于对大量蛋白质或核苷酸序列进行聚类和比较的快速程序。
Bioinformatics. 2006 Jul 1;22(13):1658-9. doi: 10.1093/bioinformatics/btl158. Epub 2006 May 26.
5
CAP3: A DNA sequence assembly program.CAP3：一个DNA序列组装程序。
Genome Res. 1999 Sep;9(9):868-77. doi: 10.1101/gr.9.9.868.