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整合miRNA和mRNA表达数据以了解妇科癌症的病因

Integration of miRNA and mRNA Expression Data for Understanding Etiology of Gynecologic Cancers.

作者信息

Paul Sushmita

机构信息

Department of Bioscience & Bioengineering, Indian Institute of Technology Jodhpur, Jodhpur, Rajasthan, India.

出版信息

Methods Mol Biol. 2019;1912:323-338. doi: 10.1007/978-1-4939-8982-9_13.

Abstract

Dysregulation of miRNA-mRNA regulatory networks is very common phenomenon in any diseases including cancer. Altered expression of biomarkers leads to these gynecologic cancers. Therefore, understanding the underlying biological mechanisms may help in developing a robust diagnostic as well as a prognostic tool. It has been demonstrated in various studies that the pathways associated with gynecologic cancer have dysregulated miRNA as well as mRNA expression. Identification of miRNA-mRNA regulatory modules may help in understanding the mechanism of altered gynecologic cancer pathways. In this regard, an existing robust mutual information-based Maximum-Relevance Maximum-Significance algorithm has been used for identification of miRNA-mRNA regulatory modules in gynecologic cancer. A set of miRNA-mRNA modules are identified first than their association with gynecologic cancer are studied exhaustively. The effectiveness of the proposed approach is compared with the existing methods. The proposed approach is found to generate more robust integrated networks of miRNA-mRNA in gynecologic cancer.

摘要

在包括癌症在内的任何疾病中,miRNA-mRNA调控网络失调都是非常常见的现象。生物标志物表达的改变导致了这些妇科癌症。因此,了解潜在的生物学机制可能有助于开发强大的诊断和预后工具。各种研究表明,与妇科癌症相关的通路中miRNA和mRNA表达均失调。鉴定miRNA-mRNA调控模块可能有助于理解妇科癌症通路改变的机制。在这方面,一种现有的基于互信息的稳健的最大相关性最大显著性算法已被用于鉴定妇科癌症中的miRNA-mRNA调控模块。首先鉴定出一组miRNA-mRNA模块,然后详尽研究它们与妇科癌症的关联。将所提出方法的有效性与现有方法进行了比较。结果发现,所提出的方法能生成更稳健的妇科癌症miRNA-mRNA整合网络。

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