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转录组测序揭示了肯尼亚百香果的完整基因组序列。

Transcriptome Sequencing Reveals a Complete Genome Sequence of from Passion Fruit in Kenya.

作者信息

Munguti F, Maina S, Nyaboga E N, Kilalo D, Kimani E, Macharia M, Holton T

机构信息

Kenya Plant Health Inspectorate Service, Nairobi, Kenya.

Biosciences eastern and central Africa-International Livestock Research Institute, Nairobi, Kenya.

出版信息

Microbiol Resour Announc. 2019 Jan 10;8(2). doi: 10.1128/MRA.01607-18. eCollection 2019 Jan.

DOI:10.1128/MRA.01607-18
PMID:30643906
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6328679/
Abstract

Analysis of transcriptome sequencing (RNA-Seq) data revealed a complete (CABMV) genome from virus-infected passion fruit in Kenya. We compared it with six complete CABMV genomes, one each from Zimbabwe and Uganda and two each from Brazil and India. The Zimbabwean isolate CABMV-Z was the closest, with 83.0% nucleotide identity.

摘要

转录组测序（RNA-Seq）数据分析揭示了来自肯尼亚受病毒感染的百香果中的一个完整的黄瓜脉斑驳病毒（CABMV）基因组。我们将其与六个完整的CABMV基因组进行了比较，其中一个来自津巴布韦，一个来自乌干达，两个来自巴西，两个来自印度。津巴布韦分离株CABMV-Z与该基因组最为接近，核苷酸同一性为83.0%。