Tianjin Key Laboratory for Modern Drug Delivery and High-Efficiency, Collaborative Innovation Center of Chemical Science and Engineering, School of Pharmaceutical Science and Technology, Tianjin University, Tianjin 300072, China.
Metabolic Engineering Research Laboratory, Institute of Chemical and Engineering Sciences, Agency for Science, Technology and Research (A*STAR), Singapore, Singapore.
Biochem J. 2019 Feb 28;476(4):733-746. doi: 10.1042/BCJ20190005.
Sulfoacetaldehyde reductase (IsfD) is a member of the short-chain dehydrogenase/reductase (SDR) family, involved in nitrogen assimilation from aminoethylsulfonate (taurine) in certain environmental and human commensal bacteria. IsfD catalyzes the reversible NADPH-dependent reduction of sulfoacetaldehyde, which is generated by transamination of taurine, forming hydroxyethylsulfonate (isethionate) as a waste product. In the present study, the crystal structure of IsfD in a ternary complex with NADPH and isethionate was solved at 2.8 Å, revealing residues important for substrate binding. IsfD forms a homotetramer in both crystal and solution states, with the C-terminal tail of each subunit interacting with the C-terminal tail of the diagonally opposite subunit, forming an antiparallel β sheet that constitutes part of the substrate-binding site. The sulfonate group of isethionate is stabilized by a hydrogen bond network formed by the residues Y148, R195, Q244 and a water molecule. In addition, F249 from the diagonal subunit restrains the conformation of Y148 to further stabilize the orientation of the sulfonate group. Mutation of any of these four residues into alanine resulted in a complete loss of catalytic activity for isethionate oxidation. Biochemical investigations of the substrate scope of IsfD, and bioinformatics analysis of IsfD homologs, suggest that IsfD is related to the promiscuous 3-hydroxyacid dehydrogenases with diverse metabolic functions.
亚硫酸乙醛还原酶(IsfD)属于短链脱氢酶/还原酶(SDR)家族成员,参与某些环境和人类共生菌中从氨基乙磺酸(牛磺酸)同化氮的过程。IsfD 催化亚硫酸乙醛的可逆 NADPH 依赖性还原,亚硫酸乙醛是由牛磺酸转氨作用生成的,形成羟乙基磺酸酯(异丁酸盐)作为废物。在本研究中,通过与 NADPH 和异丁酸盐形成三元复合物,解析了 IsfD 的晶体结构,分辨率为 2.8 Å,揭示了对底物结合重要的残基。IsfD 在晶体和溶液状态下均形成同源四聚体,每个亚基的 C 末端尾巴与对角线相对的亚基的 C 末端尾巴相互作用,形成一个反平行的 β 片层,构成部分底物结合位点。异丁酸盐的磺酸盐基团通过由残基 Y148、R195、Q244 和一个水分子形成的氢键网络得到稳定。此外,来自对角线亚基的 F249 限制 Y148 的构象以进一步稳定磺酸盐基团的取向。将这四个残基中的任何一个突变为丙氨酸都会导致异丁酸盐氧化的催化活性完全丧失。对 IsfD 的底物范围的生化研究和 IsfD 同源物的生物信息学分析表明,IsfD 与具有多种代谢功能的混杂 3-羟基酸脱氢酶有关。