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Nat Microbiol. 2017 Apr 3;2:17044. doi: 10.1038/nmicrobiol.2017.44.
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BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs.BUSCO:利用单拷贝同源基因评估基因组组装和注释的完整性。
Bioinformatics. 2015 Oct 1;31(19):3210-2. doi: 10.1093/bioinformatics/btv351. Epub 2015 Jun 9.
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Palaeosymbiosis revealed by genomic fossils of Wolbachia in a strongyloidean nematode.在一种类圆线虫中,沃尔巴克氏体的基因组化石揭示的古共生现象
PLoS Genet. 2014 Jun 5;10(6):e1004397. doi: 10.1371/journal.pgen.1004397. eCollection 2014 Jun.
4
GET_HOMOLOGUES, a versatile software package for scalable and robust microbial pangenome analysis.GET_HOMOLOGUES,一个用于可扩展且稳健的微生物泛基因组分析的通用软件包。
Appl Environ Microbiol. 2013 Dec;79(24):7696-701. doi: 10.1128/AEM.02411-13. Epub 2013 Oct 4.
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Deep sequencing of subseafloor eukaryotic rRNA reveals active Fungi across marine subsurface provinces.深海底层真核 rRNA 深度测序揭示海洋次表层各区域活跃的真菌。
PLoS One. 2013;8(2):e56335. doi: 10.1371/journal.pone.0056335. Epub 2013 Feb 13.
6
dbCAN: a web resource for automated carbohydrate-active enzyme annotation.dbCAN:一个用于自动化碳水化合物活性酶注释的网络资源。
Nucleic Acids Res. 2012 Jul;40(Web Server issue):W445-51. doi: 10.1093/nar/gks479. Epub 2012 May 29.
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SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes:一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
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MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects.MAKER2:用于第二代基因组项目的注释流水线和基因组数据库管理工具。
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来自深埋贫营养海洋沉积物中的[物种名称]的基因组序列草图 。 (注:原文中“ spp.”指代不明,推测是某种物种的复数形式,但具体物种未知,所以翻译时保留“[物种名称]”)

Draft Genome Sequences of spp. from Deeply Buried Oligotrophic Marine Sediments.

作者信息

Sobol Morgan S, Hoshino Tatsuhiko, Futagami Taiki, Inagaki Fumio, Kiel Reese Brandi

机构信息

Department of Life Sciences, Texas A&M University-Corpus Christi, Corpus Christi, Texas, USA.

Kochi Institute for Core Sample Research, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Nankoku, Japan.

出版信息

Microbiol Resour Announc. 2019 Feb 7;8(6). doi: 10.1128/MRA.01613-18. eCollection 2019 Feb.

DOI:10.1128/MRA.01613-18
PMID:30746525
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6368660/
Abstract

Here, we report genome sequences of two isolates from below the seafloor of the oligotrophic South Pacific Gyre. These genomes are the first reported for fungi from deeply buried marine sediment. Both genomes will provide valuable information regarding the role of fungi and carbon cycling in the energy-limited subsurface biosphere.

摘要

在此,我们报告了从贫营养的南太平洋环流海底以下分离出的两个菌株的基因组序列。这些基因组是首次报道的来自深埋海洋沉积物中的真菌基因组。这两个基因组将为真菌在能量有限的地下生物圈中的作用以及碳循环提供有价值的信息。