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红鼓鱼肝脏、睾丸和头肾的从头组装及转录组数据集

De novo assembly and transcriptome dataset of liver, testis and head kidney from red drum ().

作者信息

Sherwood Tracy A, Main Kevan L, Wetzel Dana L

机构信息

Mote Marine Laboratory, 1600 Ken Thompson Pkwy, Sarasota, FL 34235, USA.

出版信息

Data Brief. 2019 Jan 11;22:934-939. doi: 10.1016/j.dib.2019.01.011. eCollection 2019 Feb.

DOI:10.1016/j.dib.2019.01.011
PMID:30766908
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6362861/
Abstract

Red drum () is an estuarine Sciaenid with high commercial value and recreational demand. During the past 50 years, overfishing has caused declines in the population that resulted in the development of red drum commercial and stock enhancement aquaculture fisheries. Despite the potential high economic value in both wild and aquaculture commercial fisheries the availability of transcriptomic data for red drum in public databases is limited. The data here represents the transcriptome profiles of three tissues: liver, testis and head kidney from red drum. The data was generated using Illumina high-throughput RNA sequencing, Trinity for de novo assembly and Blast2GO for annotation. Six individual libraries were pooled for sequencing of the transcriptome and the raw fastq reads have been deposited in the NCBI-SRA database (accession number SRP11690).

摘要

红鼓鱼()是一种具有高商业价值和休闲需求的河口鲈形目鱼类。在过去50年里,过度捕捞导致其种群数量下降,从而促使红鼓鱼商业养殖和增殖放流养殖渔业的发展。尽管野生和养殖商业渔业都具有潜在的高经济价值,但公共数据库中红鼓鱼转录组数据的可用性有限。这里的数据代表了红鼓鱼肝脏、睾丸和头肾这三种组织的转录组图谱。这些数据是使用Illumina高通量RNA测序、Trinity进行从头组装以及Blast2GO进行注释生成的。六个单独的文库被汇集用于转录组测序,原始的fastq读段已存入NCBI-SRA数据库(登录号SRP11690)。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce7a/6362861/b7c7d11eb2f6/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce7a/6362861/f120494d0a7e/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce7a/6362861/0e52d4924a77/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce7a/6362861/690826308878/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce7a/6362861/5e960557094a/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce7a/6362861/b7c7d11eb2f6/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce7a/6362861/f120494d0a7e/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce7a/6362861/0e52d4924a77/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce7a/6362861/690826308878/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce7a/6362861/5e960557094a/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce7a/6362861/b7c7d11eb2f6/gr5.jpg

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本文引用的文献

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