• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

MukBEF 和黏连蛋白的折叠构象。

A folded conformation of MukBEF and cohesin.

机构信息

MRC Laboratory of Molecular Biology, Cambridge, UK.

Department of Molecular Biology and Biotechnology, University of Sheffield, Sheffield, UK.

出版信息

Nat Struct Mol Biol. 2019 Mar;26(3):227-236. doi: 10.1038/s41594-019-0196-z. Epub 2019 Mar 4.

DOI:10.1038/s41594-019-0196-z
PMID:30833788
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6433275/
Abstract

Structural maintenance of chromosomes (SMC)-kleisin complexes organize chromosomal DNAs in all domains of life, with key roles in chromosome segregation, DNA repair and regulation of gene expression. They function through the entrapment and active translocation of DNA, but the underlying conformational changes are largely unclear. Using structural biology, mass spectrometry and cross-linking, we investigated the architecture of two evolutionarily distant SMC-kleisin complexes: MukBEF from Escherichia coli, and cohesin from Saccharomyces cerevisiae. We show that both contain a dynamic coiled-coil discontinuity, the elbow, near the middle of their arms that permits a folded conformation. Bending at the elbow brings into proximity the hinge dimerization domain and the head-kleisin module, situated at opposite ends of the arms. Our findings favour SMC activity models that include a large conformational change in the arms, such as a relative movement between DNA contact sites during DNA loading and translocation.

摘要

结构维持染色体 (SMC)-连接酶复合物在所有生命领域组织染色体 DNA,在染色体分离、DNA 修复和基因表达调控中发挥关键作用。它们通过捕获和主动转运 DNA 发挥作用,但基本的构象变化在很大程度上尚不清楚。我们使用结构生物学、质谱和交联技术研究了两种进化上相距甚远的 SMC-连接酶复合物:来自大肠杆菌的 MukBEF 和来自酿酒酵母的 cohesin。我们表明,这两种复合物都含有一个动态的螺旋-卷曲不连续性,即臂中部的肘,这允许其折叠构象。在肘处弯曲使铰链二聚化结构域和头部-连接酶模块靠近,这两个结构域位于臂的两端。我们的发现支持 SMC 活性模型,其中包括臂的大构象变化,例如在 DNA 加载和转运过程中 DNA 结合位点之间的相对运动。

相似文献

1
A folded conformation of MukBEF and cohesin.MukBEF 和黏连蛋白的折叠构象。
Nat Struct Mol Biol. 2019 Mar;26(3):227-236. doi: 10.1038/s41594-019-0196-z. Epub 2019 Mar 4.
2
Cryo-EM structure of MukBEF reveals DNA loop entrapment at chromosomal unloading sites.冷冻电镜结构解析表明 MukBEF 可捕获染色体解旋位点处的 DNA 环。
Mol Cell. 2021 Dec 2;81(23):4891-4906.e8. doi: 10.1016/j.molcel.2021.10.011. Epub 2021 Nov 4.
3
Suppressor screening reveals common kleisin-hinge interaction in condensin and cohesin, but different modes of regulation.抑制子筛选揭示了在 condensin 和 cohesin 中常见的 kleisin-hinge 相互作用,但调节方式不同。
Proc Natl Acad Sci U S A. 2019 May 28;116(22):10889-10898. doi: 10.1073/pnas.1902699116. Epub 2019 May 9.
4
The structure of the cohesin ATPase elucidates the mechanism of SMC-kleisin ring opening.阐明黏连蛋白 ATP 酶结构的机制解开 SMC- kleisin 环。
Nat Struct Mol Biol. 2020 Mar;27(3):233-239. doi: 10.1038/s41594-020-0379-7. Epub 2020 Feb 17.
5
Folding of cohesin's coiled coil is important for Scc2/4-induced association with chromosomes.着丝粒蛋白的卷曲螺旋的折叠对于 Scc2/4 诱导的与染色体的关联很重要。
Elife. 2021 Jul 14;10:e67268. doi: 10.7554/eLife.67268.
6
Transport of DNA within cohesin involves clamping on top of engaged heads by Scc2 and entrapment within the ring by Scc3.DNA 在黏连蛋白内的运输涉及 Scc2 夹在结合的头部上方,并通过 Scc3 被困在环内。
Elife. 2020 Sep 15;9:e59560. doi: 10.7554/eLife.59560.
7
Acyl carrier protein promotes MukBEF action in Escherichia coli chromosome organization-segregation.酰基辅酶 A 载体蛋白促进 MukBEF 在大肠杆菌染色体组织-分离中的作用。
Nat Commun. 2021 Nov 18;12(1):6721. doi: 10.1038/s41467-021-27107-9.
8
Cohesin architecture and clustering in vivo.体内黏连蛋白的结构和聚类。
Elife. 2021 Feb 17;10:e62243. doi: 10.7554/eLife.62243.
9
ATP hydrolysis is required for relocating cohesin from sites occupied by its Scc2/4 loading complex.ATP 水解对于将黏连蛋白从其 Scc2/4 加载复合物占据的位点上重新定位是必需的。
Curr Biol. 2011 Jan 11;21(1):12-24. doi: 10.1016/j.cub.2010.12.004. Epub 2010 Dec 23.
10
A Brownian ratchet model for DNA loop extrusion by the cohesin complex.由黏连复合物介导的 DNA 环挤出的布朗棘轮模型。
Elife. 2021 Jul 26;10:e67530. doi: 10.7554/eLife.67530.

引用本文的文献

1
NIPBL and STAG1 enable loop extrusion by providing differential DNA-cohesin affinity.NIPBL和STAG1通过提供不同的DNA-黏连蛋白亲和力来实现环状挤压。
Proc Natl Acad Sci U S A. 2025 Aug 12;122(32):e2514190122. doi: 10.1073/pnas.2514190122. Epub 2025 Aug 5.
2
Mechanism of DNA capture by the MukBEF SMC complex and its inhibition by a viral DNA mimic.MukBEF SMC复合物捕获DNA的机制及其受病毒DNA模拟物的抑制作用。
Cell. 2025 May 1;188(9):2465-2479.e14. doi: 10.1016/j.cell.2025.02.032. Epub 2025 Mar 31.
3
MatP local enrichment delays segregation independently of tetramer formation and septal anchoring in Vibrio cholerae.

本文引用的文献

1
DNA-segment-capture model for loop extrusion by structural maintenance of chromosome (SMC) protein complexes.DNA 片段捕获模型用于由结构维持染色体 (SMC) 蛋白复合物的环挤出。
Nucleic Acids Res. 2019 Jul 26;47(13):6956-6972. doi: 10.1093/nar/gkz497.
2
In-Search Assignment of Monoisotopic Peaks Improves the Identification of Cross-Linked Peptides.内搜索分配单同位素峰可提高交联肽的鉴定。
J Proteome Res. 2018 Nov 2;17(11):3923-3931. doi: 10.1021/acs.jproteome.8b00600. Epub 2018 Oct 24.
3
In Vivo Evidence for ATPase-Dependent DNA Translocation by the Bacillus subtilis SMC Condensin Complex.
MatP 局部富集可独立于四聚体形成和隔膜锚定延迟霍乱弧菌的分离。
Nat Commun. 2024 Nov 15;15(1):9893. doi: 10.1038/s41467-024-54195-0.
4
Motor domain of condensin and step formation in extruding loop of DNA.DNA 伸出环中凝缩蛋白的马达结构域和步阶形成。
J Biol Phys. 2024 Dec;50(3-4):307-325. doi: 10.1007/s10867-024-09661-7. Epub 2024 Jul 30.
5
Cryo-EM structures of Smc5/6 in multiple states reveal its assembly and functional mechanisms.冷冻电镜结构研究揭示了 Smc5/6 在多种状态下的组装和功能机制。
Nat Struct Mol Biol. 2024 Oct;31(10):1532-1542. doi: 10.1038/s41594-024-01319-1. Epub 2024 Jun 18.
6
Spatio-temporal organization of the chromosome from base to cellular length scales.从碱基到细胞长度尺度的染色体时空组织。
EcoSal Plus. 2024 Dec 12;12(1):eesp00012022. doi: 10.1128/ecosalplus.esp-0001-2022. Epub 2024 Jun 12.
7
The SMC5/6 complex: folding chromosomes back into shape when genomes take a break.SMC5/6 复合物:在基因组休息时将染色体折叠回原来的形状。
Nucleic Acids Res. 2024 Mar 21;52(5):2112-2129. doi: 10.1093/nar/gkae103.
8
Activity of MukBEF for chromosome management in and its inhibition by MatP.MukBEF在[具体情境]中对染色体管理的活性及其受MatP的抑制作用。
Elife. 2024 Feb 5;12:RP91185. doi: 10.7554/eLife.91185.
9
What AlphaFold tells us about cohesin's retention on and release from chromosomes.阿尔法折叠告诉我们关于黏连蛋白在染色体上的保留和释放。
Elife. 2023 Nov 17;12:RP88656. doi: 10.7554/eLife.88656.
10
Conformational dynamics of cohesin/Scc2 loading complex are regulated by Smc3 acetylation and ATP binding.着丝粒/ Scc2 加载复合物的构象动力学受 Smc3 乙酰化和 ATP 结合的调节。
Nat Commun. 2023 Sep 22;14(1):5929. doi: 10.1038/s41467-023-41596-w.
活体内证据表明枯草芽孢杆菌 SMC 凝聚素复合物通过 ATP 酶依赖性 DNA 易位。
Mol Cell. 2018 Sep 6;71(5):841-847.e5. doi: 10.1016/j.molcel.2018.07.006. Epub 2018 Aug 9.
4
Scc2 Is a Potent Activator of Cohesin's ATPase that Promotes Loading by Binding Scc1 without Pds5.Scc2 是一个强有力的黏连蛋白 ATP 酶激活因子,它通过与 Pds5 结合而无需 Scc1 来促进加载。
Mol Cell. 2018 Jun 21;70(6):1134-1148.e7. doi: 10.1016/j.molcel.2018.05.022.
5
The Cohesin Ring Uses Its Hinge to Organize DNA Using Non-topological as well as Topological Mechanisms.黏合蛋白环使用其铰链,通过非拓扑和拓扑机制来组织 DNA。
Cell. 2018 May 31;173(6):1508-1519.e18. doi: 10.1016/j.cell.2018.04.015. Epub 2018 May 10.
6
Suppressor mutation analysis combined with 3D modeling explains cohesin's capacity to hold and release DNA.抑制突变分析与 3D 建模相结合,解释了黏连蛋白保持和释放 DNA 的能力。
Proc Natl Acad Sci U S A. 2018 May 22;115(21):E4833-E4842. doi: 10.1073/pnas.1803564115. Epub 2018 May 7.
7
Real-time imaging of DNA loop extrusion by condensin.凝缩蛋白介导的DNA环挤压的实时成像
Science. 2018 Apr 6;360(6384):102-105. doi: 10.1126/science.aar7831. Epub 2018 Feb 22.
8
Multiscale Structuring of the E. coli Chromosome by Nucleoid-Associated and Condensin Proteins.大肠杆菌染色体的核基质相关和凝聚蛋白的多尺度结构。
Cell. 2018 Feb 8;172(4):771-783.e18. doi: 10.1016/j.cell.2017.12.027. Epub 2018 Jan 18.
9
MukB ATPases are regulated independently by the N- and C-terminal domains of MukF kleisin.MukB ATP 酶由 MukF 连接蛋白的 N 端和 C 端结构域独立调节。
Elife. 2018 Jan 11;7:e31522. doi: 10.7554/eLife.31522.
10
The condensin complex is a mechanochemical motor that translocates along DNA.凝聚素复合体是一种沿DNA移位的机械化学马达。
Science. 2017 Nov 3;358(6363):672-676. doi: 10.1126/science.aan6516. Epub 2017 Sep 7.