• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

利用大数据变革药物研发。

Leveraging Big Data to Transform Drug Discovery.

作者信息

Glicksberg Benjamin S, Li Li, Chen Rong, Dudley Joel, Chen Bin

机构信息

Bakar Computational Health Sciences Institute, University of California, San Francisco, CA, USA.

Department of Genetics and Genomic Sciences, Institute of Next Generation Healthcare, Icahn School of Medicine at Mount Sinai, New York, NY, USA.

出版信息

Methods Mol Biol. 2019;1939:91-118. doi: 10.1007/978-1-4939-9089-4_6.

DOI:10.1007/978-1-4939-9089-4_6
PMID:30848458
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6657335/
Abstract

The surge of public disease and drug-related data availability has facilitated the application of computational methodologies to transform drug discovery. In the current chapter, we outline and detail the various resources and tools one can leverage in order to perform such analyses. We further describe in depth the in silico workflows of two recent studies that have identified possible novel indications of existing drugs. Lastly, we delve into the caveats and considerations of this process to enable other researchers to perform rigorous computational drug discovery experiments of their own.

摘要

公共疾病和药物相关数据可用性的激增推动了计算方法在药物发现中的应用。在本章中,我们概述并详细介绍了可用于进行此类分析的各种资源和工具。我们还深入描述了两项近期研究的计算机模拟工作流程,这些研究确定了现有药物可能的新适应症。最后,我们深入探讨了这一过程中的注意事项,以使其他研究人员能够开展自己严谨的计算机辅助药物发现实验。

相似文献

1
Leveraging Big Data to Transform Drug Discovery.利用大数据变革药物研发。
Methods Mol Biol. 2019;1939:91-118. doi: 10.1007/978-1-4939-9089-4_6.
2
Integrative cancer pharmacogenomics to establish drug mechanism of action: drug repurposing.整合癌症药物基因组学以确立药物作用机制:药物重新利用。
Pharmacogenomics. 2017 Nov;18(16):1469-1472. doi: 10.2217/pgs-2017-0132. Epub 2017 Oct 23.
3
Computational Drug Repurposing: Current Trends.计算药物再利用:现状趋势。
Curr Med Chem. 2019;26(28):5389-5409. doi: 10.2174/0929867325666180530100332.
4
Transcriptomic-Guided Drug Repositioning Supported by a New Bioinformatics Search Tool: geneXpharma.转录组学指导的药物重定位得到新生物信息学搜索工具的支持:geneXpharma。
OMICS. 2017 Oct;21(10):584-591. doi: 10.1089/omi.2017.0127.
5
Implementation of a Pipeline Using Disease-Disease Associations for Computational Drug Repurposing.利用疾病-疾病关联进行计算药物再利用的管道实施
Methods Mol Biol. 2019;1903:129-148. doi: 10.1007/978-1-4939-8955-3_8.
6
Transcriptomic Data Mining and Repurposing for Computational Drug Discovery.用于计算药物发现的转录组学数据挖掘与药物重新利用
Methods Mol Biol. 2019;1903:73-95. doi: 10.1007/978-1-4939-8955-3_5.
7
Computational Methods for Drug Repurposing.药物重定位的计算方法。
Adv Exp Med Biol. 2022;1361:119-141. doi: 10.1007/978-3-030-91836-1_7.
8
Use of Computational Functional Genomics in Drug Discovery and Repurposing for Analgesic Indications.计算功能基因组学在药物发现和重新定位中的应用:用于镇痛适应症。
Clin Pharmacol Ther. 2018 Jun;103(6):975-978. doi: 10.1002/cpt.960. Epub 2018 Jan 19.
9
Drug repurposing: Iron in the fire for older drugs.药物再利用:老药新用的希望——铁。
Biomed Pharmacother. 2021 Sep;141:111638. doi: 10.1016/j.biopha.2021.111638. Epub 2021 Jun 18.
10
Repurposing of biologics and biopharmaceuticals.生物制品和生物制药的再利用。
Prog Mol Biol Transl Sci. 2024;205:277-302. doi: 10.1016/bs.pmbts.2024.03.028. Epub 2024 Apr 2.

引用本文的文献

1
Computational drug discovery pipelines identify NAMPT as a therapeutic target in neuroendocrine prostate cancer.计算药物发现管道将 NAMPT 鉴定为神经内分泌前列腺癌的治疗靶点。
Clin Transl Sci. 2024 Sep;17(9):e70030. doi: 10.1111/cts.70030.
2
Development of digital health management systems in longitudinal study: The Malaysian cohort experience.纵向研究中数字健康管理系统的发展:马来西亚队列研究经验
Digit Health. 2024 Sep 12;10:20552076241277481. doi: 10.1177/20552076241277481. eCollection 2024 Jan-Dec.
3
Accelerating drug discovery and repurposing by combining transcriptional signature connectivity with docking.

本文引用的文献

1
Reversal of cancer gene expression correlates with drug efficacy and reveals therapeutic targets.癌症基因表达的逆转与药物疗效相关,并揭示了治疗靶点。
Nat Commun. 2017 Jul 12;8:16022. doi: 10.1038/ncomms16022.
2
Celebrating parasites.赞美寄生虫。
Nat Genet. 2017 Mar 30;49(4):483-484. doi: 10.1038/ng.3830.
3
Reproducibility of computational workflows is automated using continuous analysis.计算工作流程的可重复性通过持续分析实现自动化。
通过将转录特征连通性与对接相结合来加速药物发现和重新定位。
Sci Adv. 2024 Aug 30;10(35):eadj3010. doi: 10.1126/sciadv.adj3010.
4
Foundational model aided automatic high-throughput drug screening using self-controlled cohort study.利用自我对照队列研究的基础模型辅助自动高通量药物筛选
medRxiv. 2024 Sep 16:2024.08.04.24311480. doi: 10.1101/2024.08.04.24311480.
5
Incidence of type 2 diabetes, cardiovascular disease and chronic kidney disease in patients with multiple sclerosis initiating disease-modifying therapies: Retrospective cohort study using a frequentist model averaging statistical framework.多发性硬化症患者启动疾病修正治疗后 2 型糖尿病、心血管疾病和慢性肾脏病的发病率:使用频率派模型平均统计框架的回顾性队列研究。
PLoS One. 2024 Mar 22;19(3):e0300708. doi: 10.1371/journal.pone.0300708. eCollection 2024.
6
Big data and artificial intelligence in future patient management. How is it all started? Where are we at now? Quo tendimus?未来患者管理中的大数据与人工智能。这一切是如何开始的?我们目前处于什么阶段?我们将走向何方?
Adv Lab Med. 2020 May 6;1(3):20200014. doi: 10.1515/almed-2020-0014. eCollection 2020 Oct.
7
Drug repositioning targeting glutaminase reveals drug candidates for the treatment of Alzheimer's disease patients.靶向谷氨酰胺酶的药物重定位揭示了治疗阿尔茨海默病患者的药物候选物。
J Transl Med. 2023 May 20;21(1):332. doi: 10.1186/s12967-023-04192-6.
8
Artificial Intelligence, Machine Learning, and Big Data for Ebola Virus Drug Discovery.用于埃博拉病毒药物研发的人工智能、机器学习和大数据
Pharmaceuticals (Basel). 2023 Feb 21;16(3):332. doi: 10.3390/ph16030332.
9
Artificial intelligence and machine-learning approaches in structure and ligand-based discovery of drugs affecting central nervous system.基于结构和配体的影响中枢神经系统药物发现中的人工智能和机器学习方法
Mol Divers. 2023 Apr;27(2):959-985. doi: 10.1007/s11030-022-10489-3. Epub 2022 Jul 11.
10
Proteomics and Drug Repurposing in CLL towards Precision Medicine.慢性淋巴细胞白血病中的蛋白质组学与药物再利用迈向精准医学
Cancers (Basel). 2021 Jul 6;13(14):3391. doi: 10.3390/cancers13143391.
Nat Biotechnol. 2017 Apr;35(4):342-346. doi: 10.1038/nbt.3780. Epub 2017 Mar 13.
4
Computational Discovery of Niclosamide Ethanolamine, a Repurposed Drug Candidate That Reduces Growth of Hepatocellular Carcinoma Cells In Vitro and in Mice by Inhibiting Cell Division Cycle 37 Signaling.氯硝柳胺乙醇胺的计算发现,一种重新利用的候选药物,通过抑制细胞分裂周期37信号通路在体外和小鼠体内降低肝癌细胞的生长。
Gastroenterology. 2017 Jun;152(8):2022-2036. doi: 10.1053/j.gastro.2017.02.039. Epub 2017 Mar 8.
5
Systematic analyses of drugs and disease indications in RepurposeDB reveal pharmacological, biological and epidemiological factors influencing drug repositioning.RepurposeDB 中的药物和疾病适应症的系统分析揭示了影响药物重新定位的药理学、生物学和流行病学因素。
Brief Bioinform. 2018 Jul 20;19(4):656-678. doi: 10.1093/bib/bbw136.
6
Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.全基因组关联分析用于肺功能和慢性阻塞性肺疾病,确定了新的基因座和潜在的可药物靶向。
Nat Genet. 2017 Mar;49(3):416-425. doi: 10.1038/ng.3787. Epub 2017 Feb 6.
7
Novel Therapeutics Identification for Fibrosis in Renal Allograft Using Integrative Informatics Approach.基于整合信息学方法的肾移植纤维化新型治疗药物的鉴定。
Sci Rep. 2017 Jan 4;7:39487. doi: 10.1038/srep39487.
8
Distribution and clinical impact of functional variants in 50,726 whole-exome sequences from the DiscovEHR study.50726 例全外显子组序列中的功能变体的分布和临床影响:DiscovEHR 研究。
Science. 2016 Dec 23;354(6319). doi: 10.1126/science.aaf6814.
9
In silico and in vitro drug screening identifies new therapeutic approaches for Ewing sarcoma.计算机模拟和体外药物筛选确定了尤因肉瘤的新治疗方法。
Oncotarget. 2017 Jan 17;8(3):4079-4095. doi: 10.18632/oncotarget.13385.
10
Integrating Clinical Phenotype and Gene Expression Data to Prioritize Novel Drug Uses.整合临床表型与基因表达数据以确定新型药物用途的优先级。
CPT Pharmacometrics Syst Pharmacol. 2016 Nov;5(11):599-607. doi: 10.1002/psp4.12108. Epub 2016 Nov 14.