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来自“天狗麦饭”(一种类似土壤的微生物颗粒团)中分离出的新属种豆野杆菌(Tengunoibacter tsumagoiensis)、新种小林迪茨氏菌(Dictyobacter kobayashii)、新种高山迪茨氏菌(Dictyobacter alpinus)以及迪茨氏菌科(Dictyobacteraceae)新科的描述,该科属于从“天狗麦饭”中分离出的克氏杆菌目(Ktedonobacterales),同时对克氏杆菌属(Ktedonobacter)和迪茨氏菌属(Dictyobacter)进行了修订描述。

Tengunoibacter tsumagoiensis gen. nov., sp. nov., Dictyobacter kobayashii sp. nov., Dictyobacter alpinus sp. nov., and description of Dictyobacteraceae fam. nov. within the order Ktedonobacterales isolated from Tengu-no-mugimeshi, a soil-like granular mass of micro-organisms, and emended descriptions of the genera Ktedonobacter and Dictyobacter.

作者信息

Wang Chiung-Mei, Zheng Yu, Sakai Yasuteru, Toyoda Atsushi, Minakuchi Yohei, Abe Keietsu, Yokota Akira, Yabe Shuhei

机构信息

1​Department of Microbial Resources, Graduate School of Agricultural Sciences, Tohoku University, Sendai, Miyagi 980-0845, Japan.

2​Hazaka Plant Research Center, Kennan Eisei Kogyo Co., Ltd, Miyagi 989-1311, Japan.

出版信息

Int J Syst Evol Microbiol. 2019 Jul;69(7):1910-1918. doi: 10.1099/ijsem.0.003396. Epub 2019 Apr 16.

Abstract

Three mesophilic, Gram-stain-positive, aerobic bacterial strains, designated Uno3, Uno11 and Uno16, were isolated from a soil-like granular micro-organism mass (termed Tengu-no-mugimeshi) collected from Tsumagoi, Gunma, Japan. They grow at 11-37 °C and pH 4.0-8.0, form branched mycelia, and have a G+C content between 49.4-50.3 mol%. The major menaquinone and fatty acid of Uno3 are MK-9 and iso-C16 : 0, respectively, whereas Uno11 and Uno16 share MK-9 (H2) and C16 : 1-2OH. The major cell-wall sugars are mannose (Uno3 and Uno11) and glucose (Uno16). Phylogenetic analysis based on 16S rRNA gene sequences indicated that these three strains belong to the order Ktedonobacterales and are most closely related to Dictyobacter aurantiacus S-27 (sequence similarity of 91.3, 96.4 and 95.5 %). Average nucleotide identity values were <79.9 % among Uno11, Uno16 and D. aurantiacus S-27, well below the 95-96 % species circumscription threshold. Based on phenotypic features and phylogenetic positions, we propose that Uno3 represents a novel genus and species, Tengunoibacter tsumagoiensis gen. nov., sp. nov. (type strain Uno3=NBRC 113152=LMG 30471=BCRC 81113) within the new family Dictyobacteraceae fam. nov. Strains Uno11 and Uno16 are also considered to represent novel species: Dictyobacterkobayashii sp. nov. (type strain Uno11=NBRC 113153=LMG 30472=BCRC 81114) and Dictyobacteralpinus sp. nov. (type strain Uno16=NBRC 113154=BCRC 81115). We also propose an emended description of the genus Dictyobacter, classifying it within family Dictyobacteraceae, and provide emended descriptions of the genera Dictyobacter and Ktedonobacter.

摘要

从日本群马县妻笼采集的一种类似土壤的颗粒状微生物团(称为天狗之麦饭)中分离出三株嗜温、革兰氏染色阳性、需氧细菌菌株,分别命名为Uno3、Uno11和Uno16。它们在11-37°C和pH 4.0-8.0条件下生长,形成分支菌丝体,G+C含量在49.4-50.3 mol%之间。Uno3的主要甲基萘醌和脂肪酸分别为MK-9和异-C16 : 0,而Uno11和Uno16共有MK-9(H2)和C16 : 1-2OH。主要细胞壁糖为甘露糖(Uno3和Uno11)和葡萄糖(Uno16)。基于16S rRNA基因序列的系统发育分析表明,这三株菌株属于Ktedonobacterales目,与橙色双歧杆菌S-27关系最为密切(序列相似性分别为91.3%、96.4%和95.5%)。Uno11、Uno16和橙色双歧杆菌S-27之间的平均核苷酸同一性值<79.9%,远低于95-96%的物种界定阈值。基于表型特征和系统发育位置,我们提出Uno3代表一个新的属和种,即妻笼天狗杆菌(Tengunoibacter tsumagoiensis),属于新的科——双歧杆菌科(Dictyobacteraceae)(模式菌株Uno3=NBRC 113152=LMG 30471=BCRC 81113)。菌株Uno11和Uno16也被认为代表新物种:小林双歧杆菌(Dictyobacterkobayashii)(模式菌株Uno11=NBRC 113153=LMG 30472=BCRC 81114)和高山双歧杆菌(Dictyobacteralpinus)(模式菌株Uno16=NBRC 113154=BCRC 81115)。我们还提出了对双歧杆菌属的修订描述,将其归入双歧杆菌科,并提供了双歧杆菌属和Ktedonobacter属的修订描述。

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